Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq267 203 8e-47 seq322 172 1e-37 seq837 154 4e-32 >seq267 Length=38185 Score = 203 bits (224), Expect = 8e-47 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| ||| ||| ||| |||||||| | ||||| | ||| ||| | | Sbjct 25615 ACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTGTTGGTACAACATTATCTCTTTTA 25556 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || || | |||||||| || ||| |||||| || | || ||| ||| | || Sbjct 25555 ATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATAT 25496 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || |||| || ||||| ||| | ||| |||| ||||| |||||||| | | | Sbjct 25495 AATGTTGTTGTTACCGCACATGCTTTTATCATGGTTTTTTTTTTAGTTATGCCTGCTTTA 25436 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| ||||| || || || || |||||||||||||||||||| ||||||||||||||| Sbjct 25435 ATAGGTGGTTTTGGTAACTGGTTTGTTCCTTTAATGATTGGTGCCCCTGATATGGCTTTT 25376 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 25375 CCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 25329 Score = 129 bits (142), Expect = 1e-24 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| |||||||| || |||||||||||||||||||| || Sbjct 1162 AAAATTTGTCCATCAGTAATAGAAATAACATTAGTTGGGATATAAGCAGAAACATCCCCA 1103 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| ||||||| ||| || ||||| | |||||||| Sbjct 1102 GCTTGAGTTTCAATAATAGGTAAAGCTGTTAATGAACCTCCACCTATTTTTTTATT 1047 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||| || || |||||||||||||| | | |||||| ||||| ||||| Sbjct 24932 TTCAGGATGACCAAAGAACCAAAATAAATGTTGATATAATACAGGATCTCCTCCACCTGA 24991 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 24992 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 25035 Score = 113 bits (124), Expect = 1e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 25110 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 25169 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 25170 TTAATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 25229 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| |||| ||| || || |||||||| || || Sbjct 25230 ACCGAAGGACCTGAATGTGCTTGTACACTAGA---TAATGGTGGATAAACTGTCCAACCC 25286 Query 371542 GT 371543 || Sbjct 25287 GT 25288 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 28993 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 28934 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 28933 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 28875 Query 6865 GTAAT 6869 | ||| Sbjct 28874 GCAAT 28870 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 28306 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 28365 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 28366 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 28425 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 28426 AACGCGTTAGCT 28437 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 ||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | || Sbjct 7680 GGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGT 7621 Query 372684 AAAACGATGTATAGGGTCTGACAC 372707 || | ||||||||||||||||||| Sbjct 7620 AACATGATGTATAGGGTCTGACAC 7597 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | ||||| | || || || |||||||||| | |||| |||||||||||||||| Sbjct 829 CACCATTACAATATTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATA 888 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||||||||| | || | || ||||||||| |||||| Sbjct 889 ATGGTAAACATGCTGTTATTTTTTATGATGATTTATCAAAACAA 932 >seq322 Length=35284 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || ||| Sbjct 20317 ACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT 20376 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || ||||| ||||| ||||| || || Sbjct 20377 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCC 20436 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 20437 TTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAG 20496 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTT 225726 ||||||||||||||||||||| || || | ||| | ||||| || | |||| || Sbjct 20497 CGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATCTTCTCGTTAGTT 20551 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || ||| Sbjct 20089 ACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT 20148 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || ||||| ||||| ||||| || || Sbjct 20149 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCC 20208 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 20209 TTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAG 20268 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||||| || || | ||| | ||||| Sbjct 20269 CGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20310 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || || || || || |||| ||||| ||| || ||| Sbjct 19862 CGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTG 19921 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || ||||| ||||| ||||| || ||| Sbjct 19922 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCT 19981 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| ||||| |||||||| ||||| | ||| || | |||||||| | | Sbjct 19982 TCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGC 20041 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 20042 GTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 >seq837 Length=16651 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || ||| || Sbjct 6246 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGT 6187 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | ||| || ||||||||||| || || Sbjct 6186 ACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCC 6127 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||| || |||||||| ||||| | ||| || | |||||||| | Sbjct 6126 TTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 6067 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||| |||| ||| || | ||| | ||||| || Sbjct 6066 CGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATCTT 6022 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || ||| || Sbjct 6474 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGT 6415 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | ||| || ||||||||||| || || Sbjct 6414 ACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCC 6355 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||| || |||||||| ||||| | ||| || | |||||||| | Sbjct 6354 TTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 6295 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||| |||| ||| || | ||| | ||||| Sbjct 6294 CGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || ||| || Sbjct 6702 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGT 6643 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | ||| || ||||||||||| || || Sbjct 6642 ACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCC 6583 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||| || |||||||| ||||| | ||| || | |||||||| | Sbjct 6582 TTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 6523 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||| |||| ||| || | ||| | ||||| Sbjct 6522 CGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192465285073916