Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq46 125 6e-24 seq86 86.0 5e-12 >seq46 Length=92734 Score = 125 bits (138), Expect = 6e-24 Identities = 434/667 (65%), Gaps = 25/667 (4%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || |||||||||| || || || || || || || | | || |||||||| || Sbjct 3669 AGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGAACAAACTCGCCA 3728 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| || || | || || || |||| ||| || || | ||||||||||||||| Sbjct 3729 GGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAGCTGGCGATGTTG 3788 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || || || ||||| |||||||| | || | |||||| | ||||||||| | ||| ||| Sbjct 3789 AATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCACCG 3848 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 3849 TCTGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGCAGCGCCATTTCATTGAGA 3905 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT-GTTC-CTG-ATG 29941 || ||||||||| || ||| | || || | ||| ||||| || | | | || Sbjct 3906 TCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTACGCAGCTTG 3965 Query 29942 AGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNN 30000 | ||| | ||| ||||| ||||| || || | ||||| | Sbjct 3966 TGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGCATGCATGTT 4021 Query 30001 NNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 30060 | ||||| | ||| ||||| || || |||||||| || ||||| | Sbjct 4022 CGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAGATCTCCTAC 4081 Query 30061 TTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 |||| ||| || || || || |||||| | || | || || ||| ||||||||| Sbjct 4082 CTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGA 4140 Query 30120 TCTTTACCCCCTTCT-CGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 | | | |||||| | || ||| | | || | | ||| || || | ||||||||| Sbjct 4141 TATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAATGAACCACAG 4198 Query 30178 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAA---ACT 30233 |||||||||| | || | ||| || |||||||| ||||| || | ||||| | | Sbjct 4199 CAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGGGAATACATT 4258 Query 30234 GTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCC 30293 || || | || | | ||| ||||| |||||| | |||| ||||| || || | Sbjct 4259 GTTCC-TCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCGTTCCCGTTC 4317 Query 30294 TGTCTCC 30300 |||||| Sbjct 4318 GGTCTCC 4324 >seq86 Length=68935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 49932 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49991 ||| ||||| || ||||| | |||||| | |||||||| ||| | || ||||| || Sbjct 19558 GTTGAACAGGATCACGCCAACGTTGCCGCGGTAGTCGGCGTCGATGACACCGGCGCCAGT 19617 Query 49992 GTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 50051 ||| || ||||| ||||| |||||||| || | || ||||| | | ||||| ||| Sbjct 19618 GTCGATGAACTTCTTCAGTGCCAGGCCAGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTC 19677 Query 50052 GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCC 50093 ||||| | | | ||||||||||| || || || |||| Sbjct 19678 GGGCACAGCGATGACCAGGTCCGTCTTGACGAGCCCCTTGCC 19719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406141845208204