Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq46 172 4e-38 seq86 93.3 3e-14 >seq46 Length=92734 Score = 172 bits (190), Expect = 4e-38 Identities = 454/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| || || |||||||| | || || || || ||||| || | | || Sbjct 3657 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 3716 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || |||| || || | || || || |||| ||| || || | |||| Sbjct 3717 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 3776 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || ||||| ||||| |||||||| |||| | |||||| | ||| ||| Sbjct 3777 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAC 3836 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || || ||||| ||||| || | ||||||||| || || ||||| Sbjct 3837 GACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATT 3896 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTT 27428 | || ||||||||| || ||| | || || | ||| ||||| || Sbjct 3897 TCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTA 3956 Query 27429 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 | | | || | ||| | ||| ||||| ||||| || || | ||||| | Sbjct 3957 CGCAGCTTGTGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGC 4012 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 ||||| |||||| | || || ||||| | ||||||||| || || |||||||| || Sbjct 4013 ATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAG 4072 Query 27546 GTCTCCCTCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 ||||| | |||| ||| || || || || |||||| | || | || || ||| Sbjct 4073 ATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGC 4131 Query 27605 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGAC 27662 |||||||||| | | |||||| | || ||| | | || | | ||| || || | Sbjct 4132 CGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAAT 4189 Query 27663 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 27721 ||||||||||||||||||| | || | ||| || |||||||| ||||| || | || Sbjct 4190 GAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGG 4249 Query 27722 GAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 27778 ||| | ||| || | || | | || ||||| ||||| || |||| |||| Sbjct 4250 GAATACATTGTTCC-TCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCG 4308 Query 27779 TGCCCGTCCTGTCTCC 27794 | ||||| | |||||| Sbjct 4309 TTCCCGTTCGGTCTCC 4324 >seq86 Length=68935 Score = 93.3 bits (102), Expect = 3e-14 Identities = 174/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | |||| || | |||||| || | | ||| Sbjct 19465 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCCAGGATGAGCTGTGCCACTCGGTC 19524 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | ||| ||||| || ||||| | |||||| Sbjct 19525 CCCACGCTTGACGGGGAAGTCTTCGGGCGAGTGGTTGAACAGGATCACGCCAACGTTGCC 19584 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | || ||||| || ||| || || || ||||| |||||||| Sbjct 19585 GCGGTAGTCGGCGTCGATGACACCGGCGCCAGTGTCGATGAACTTCTTCAGTGCCAGGCC 19644 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 || | || ||||| | | ||||| ||| ||||| | ||||||||||||||| Sbjct 19645 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACAGCGATGACCAGGTCCGTCTT 19704 Query 45066 TACCAGGGCCCTGCCT 45081 || || || ||||| Sbjct 19705 GACGAGCCCCTTGCCT 19720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369487772466134