Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_030920.1 Length=165868 Score E Sequences producing significant alignments: (Bits) Value seq3219 138 1e-27 >seq3219 Length=1827 Score = 138 bits (152), Expect = 1e-27 Identities = 367/552 (66%), Gaps = 13/552 (2%) Strand=Plus/Plus Query 97081 GAATTACCACAAGAACGTTTCCTTGTTATCGCTATGACATTAATGAGCCAAGAGAAGAAA 97140 ||||| || ||||| |||| | | |||||||| ||| | ||| ||| ||| Sbjct 997 GAATTGCCTCAAGAGCGTTACATGGTTATCGCGATGTACCTGATGCACCAGGAGCCTGCG 1056 Query 97141 GAGAAACGTATCGAGCTAGTTAAAGAGTCATACTGGGCTCT-ATCAAGTTTATATATGAC 97199 |||| |||||| || || ||||| || | |||||||| | | ||| | || ||||| Sbjct 1057 GAGAGACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATG-TACATGAC 1115 Query 97200 AGTAGCAACACCAACACTAGCCAATGCAGGTAAAA-----GCTACGGACAGCTTTCTAGC 97254 || ||| ||||| || | ||||||| || |||| || |||||| ||||| ||| Sbjct 1116 AGCAGCTACACCTACGATGTCCAATGCGGGCAAAAAAGTGGC--CGGACAACTTTCCAGC 1173 Query 97255 TGCTTTATTGATACAATCGATGACAGCTTACGAGGTATCTACGATAGTAACACAGACCTT 97314 ||||| |||||||| | ||||| | | || |||| |||| |||||||| | Sbjct 1174 TGCTTCATTGATACCGTGGATGATTCCCTTGAGGGCATCTTCGATTCCAACACAGATGTA 1233 Query 97315 GCTATGTTAAGTAAGAATGGTGGAGGCATCGGCGTGTATTTAGGCCACATCCGAAGCCGT 97374 || | || || | || || ||||||||||| || | || | || || || Sbjct 1234 GCGCGTCTCAGCAAAATGGGCGGCGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGC 1293 Query 97375 GGTAGTGATATTAGAGGGTTTAAAGGTGTATCATCTGGTACAATCCCTTGGATGAAACAA 97434 ||| || || | || ||| | | ||||| |||||||||||| ||| Sbjct 1294 GGTTCGGACATCCGGGGTCACAAAAATACAAGCTCTGGCGTAATCCCTTGGATTCGCCAA 1353 Query 97435 TTAAATAACACAGCAGTATCTGTAGACCAACTAGGACAGCGACAAGGGGCTATTGCAGTA 97494 ||||||| || || || |||||||| || ||| || |||| || || || || Sbjct 1354 CTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGTT 1413 Query 97495 TACCTAGACGTATGGCATAAAGACATCTTCTCATTCCTAGA-CGCACGTTTAAACAACGG 97553 || || ||||| | || ||||||||||| | ||||| || | | | | ||||| || Sbjct 1414 TATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCTCGATCTGAAG-CTGAACAATGG 1472 Query 97554 AGACGAGCGCCAACGTACACATGACCTATT-TACGGGAGTTTGTTTACCGGATTTATTCA 97612 |||||||| ||| | |||||| |||| |||| | |||| | || || | |||| Sbjct 1473 TGACGAGCGGATGCGTGCGCATGACGTATTCCACGGCA-TTTGCCTGCCTGACCTGTTCA 1531 Query 97613 TGGAGAAAGTAG 97624 ||||| ||||| Sbjct 1532 TGGAGCGAGTAG 1543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530620984720320