Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq322 172 1e-37 seq837 158 3e-33 seq552 131 4e-25 seq30 127 4e-24 seq6 100 6e-16 seq422 91.5 3e-13 seq173 91.5 3e-13 >seq322 Length=35284 Score = 172 bits (190), Expect = 1e-37 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 20312 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20371 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| ||||| |||||| ||| Sbjct 20372 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 20431 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 20432 ATGCCTTCCTTATCTTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20490 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 20491 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATCTTC 20542 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 20084 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20143 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| ||||| |||||| ||| Sbjct 20144 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 20203 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 20204 ATGCCTTCCTTATCTTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20262 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 20263 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20310 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||||||| | ||| || || |||||||||||||| Sbjct 19856 CCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 19915 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| ||||| |||||| ||| Sbjct 19916 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 19975 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 19976 ATGCCTTCCTTATCTTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20034 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 20035 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 >seq837 Length=16651 Score = 158 bits (174), Expect = 3e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || ||||||||||||||| Sbjct 6251 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6192 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || || ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 6191 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6132 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||| || ||||| ||| | ||||| | |||||| | || || Sbjct 6131 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6073 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || |||| |||||| ||||| |||||||| || Sbjct 6072 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATCTT 6022 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || ||||||||||||||| Sbjct 6479 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6420 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || || ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 6419 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6360 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||| || ||||| ||| | ||||| | |||||| | || || Sbjct 6359 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6301 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| |||||| ||||| |||||||| Sbjct 6300 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || ||||||||||||||| Sbjct 6707 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6648 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || || ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 6647 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6588 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||| || ||||| ||| | ||||| | |||||| | || || Sbjct 6587 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6529 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| |||||| ||||| |||||||| Sbjct 6528 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 >seq552 Length=27436 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||| ||||| || || || ||||| |||||| Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 16482 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 16481 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAA 16422 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 16421 GATCTGCAT 16413 >seq30 Length=241204 Score = 127 bits (140), Expect = 4e-24 Identities = 296/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| | ||||||||| || | ||||||| || || || Sbjct 59235 AGACCAACCCGTACCGATACCTTCCGCACCATTCACGAGCAGCATCGGGATGATAGGAAC 59176 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 ||||| ||||||||| | |||||||||| ||| | |||||||||||| Sbjct 59175 GTAATACACGGGCTCAACTGGGAATCCATCGTCGTCGGCGTAGCGGAGCAAAGCATCATC 59116 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 ||| || ||| || || || | || ||| || || |||| | ||| Sbjct 59115 TTCCTCAGGAAATACCAAGCGGGTGTGCTTCTGAAGCAGCGTAAAGATATACCGAGGACT 59056 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG---CAGTAGCCA 273856 ||| |||||||| ||||||||||| | ||| ||||| || || || ||| Sbjct 59055 AGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGGCCTGATGGATACAACAGCGG 58996 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | ||||||| ||| ||| | ||||| ||||| || || || ||| || | || Sbjct 58995 A---AGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAACAATCGTCGAATGCAACGA 58939 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | || ||||||||||| || |||| || | ||||| || ||| || ||||| Sbjct 58938 AGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACCCGCGAGCTGCGCCACCTT 58879 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAGGG 274033 ||| ||||| |||| | ||||| | | ||| || | ||||||||||||||| Sbjct 58878 CACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGAAA---AGCACCTTCCGCTGCGAAAT 58822 Query 274034 CTTGAACCCATCAACGACCGATGG 274057 ||| | ||||| || |||||||| Sbjct 58821 CTTAAGACCATCGACCACCGATGG 58798 >seq6 Length=160627 Score = 100 bits (110), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| || || Sbjct 12712 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCATCGAGG 12771 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 12772 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 12831 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 12832 TTCCACAC 12839 >seq422 Length=29202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| | Sbjct 14205 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 14264 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 14265 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 14319 Score = 87.8 bits (96), Expect = 4e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| ||||| || ||| || || | || || ||||||| | || || Sbjct 14401 ATACCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCAC 14459 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 14460 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 14511 >seq173 Length=52550 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | ||||| || |||||||| || || | || ||| ||| Sbjct 33029 TTGGTGAAAATGTAACGAGCACTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 33088 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| ||| ||| || ||||||||||| ||||| ||||||| ||||||||| Sbjct 33089 TGACCGATAGGCGATAGAAGGTGGATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTC 33148 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 |||||| ||||| | | | ||||||||||| || || || |||| | ||| Sbjct 33149 ACGATACAGCCCTGCAAGCTTTGTTCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAA 33208 Query 273957 CCACTGAACTGAGCAACCTT 273976 ||| | ||| || ||||| Sbjct 33209 CCAGCCAGCTGTGCCACCTT 33228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046681343453356