Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq197 161 2e-34 seq1349 113 1e-19 >seq197 Length=41850 Score = 161 bits (178), Expect = 2e-34 Identities = 681/1058 (64%), Gaps = 53/1058 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| || || Sbjct 29139 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCATCGAG 29080 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 29079 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 29020 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || | || Sbjct 29019 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATCGTCGA 28960 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||||| ||| | || | | ||| || || ||| Sbjct 28959 CTTACCGGCACCGTTGGGGCCCAGAACAGCAATACGGCTCGACAGAGCGCA-CGTCACC- 28902 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || | || || || |||| | || ||| Sbjct 28901 --GAAATGTTGTTGATCGACG----GCTTGACAGTGCCGGGGTACTGGTACGA-ACAGTT 28849 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 ||| || || |||| |||| |||| | | ||||| |||||||| || Sbjct 28848 CGTCAGACGAATAATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGG 28789 Query 319341 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 319397 |||| | || | | ||| || ||| || |||||||| | | ||||| Sbjct 28788 GAACGTGAACTTCACGTTCTCCGACTCC---AGCTCGTAGTAAGCCTTAGCCTCGGGCTT 28732 Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||||| |||||| || |||||||| |||||||||| || | ||||| Sbjct 28731 CTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTA 28675 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 || ||||| |||||| || | ||| ||||| || |||||||| ||||| || | | Sbjct 28674 GTGAATAATGTTGGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATGATAGA 28615 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAG 319577 | |||| | || ||||||| | || |||| ||||| ||| | Sbjct 28614 AGTCACGTTGGTCAGACCCGTCAGGTAGTTCTCCAGCCACGCGACGTTCTTGACATCCAA 28555 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || || Sbjct 28554 GTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCAGCCTTCTGCAGCATGGCACGGGCCAG 28495 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAAT----TGGGGCAGATTGGCGCT 319693 | |||||||| ||||| || || ||||||||| || |||| | | | || Sbjct 28494 CTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCAACGCCCTGGGCCTGCAT----CT 28439 Query 319694 CA-ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 || | | || ||| |||| | || || ||| || | || | |||| Sbjct 28438 CAGAGGTGAAGCCCACACCGG--CAAGGGTGTCCTCGACCTCCTTGCGGGGGG---TGTT 28384 Query 319752 TTCCTTTACTTGTTCATCATTGGCAA---TGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| | | ||||||| | | ||||||| | | | | | || || || Sbjct 28383 ---CTTCA---GGTCATCATCCACCAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGA 28330 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAG-GGGAACCCTT 319867 | | || | ||| || ||| || ||| |||| | || || | ||||| || | Sbjct 28329 AGCCTGCAGGTTGTGCTCAACGAAAATAGTCTTCAGCTCGTC-GCGGCTCGGGAAGCCCT 28271 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 | ||||||||||| ||| ||||||||||| || || ||||| ||||| || || | Sbjct 28270 CCAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGC 28211 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 |||||||||| |||| ||||| || || | || | ||||||||| ||||| | | Sbjct 28210 ACAGACCGTAACGGTGACCGCGCTTGAGACGAAGACGGGCGTTGTTCAGCAGAATCATAC 28151 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||||||| || || || || || || | ||||| ||| Sbjct 28150 CACCATAGGCAAGCGAGAACTCGCAGTTGCACAGGTCC 28113 >seq1349 Length=11778 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 10617 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 10558 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10557 CCCACGGTGGGC 10546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057742327392380