Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 4e-15 >seq14 Length=111874 Score = 96.9 bits (106), Expect = 4e-15 Identities = 303/461 (66%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || |||||||| || | || || || | |||||| || ||||| || | Sbjct 21933 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGA 21874 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 21873 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 21815 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| || || || || || | | || |||| ||| | | || Sbjct 21814 GAGAAGAAGATGCCCTCCACCGAGGCGAACGCCAGCAGACGCTCCGGGTATGACGACACA 21755 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | || | ||| || || |||| | |||||| | | | || || || || Sbjct 21754 CGTGGGTCGCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTC 21696 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGA---TTATATACGTATCAATCAG 16488 ||||| | ||| | || || || ||| || | || ||||| ||||| || Sbjct 21695 AATGGCACGCAGCAAGTGGTCCTTCTC---AATGGCGTCCTTGATGTACGTGTCAATGAG 21639 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 | ||| | || ||||| |||||||| ||||| ||||| || || |||||||| || Sbjct 21638 CAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCG 21579 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATA 16606 |||||| | | || ||||| | || |||| ||||||||||| || ||||| Sbjct 21578 AGCCTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTTACGATG 21521 Query 16607 CCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || ||||| || || ||||| || | | ||||| | ||| Sbjct 21520 CCATCACTGGCCGCGAAAAAGGCGAGCACATGCTTGACGAA 21480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511375877710320