Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq32 196 6e-45 >seq32 Length=91914 Score = 196 bits (216), Expect = 6e-45 Identities = 405/591 (69%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||||||||||||||| || || || ||||| || | ||| || | || || || Sbjct 87182 AGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGAACAAACTCGCCA 87123 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || || | | || || | || || ||||| | ||||||||| |||||| Sbjct 87122 GGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAGCTGGCGATGTTG 87063 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || || || || || |||||||| ||||||||||||||| |||||| || | ||| ||| Sbjct 87062 AATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCACCG 87003 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 | ||||||||||||||||| | | |||||| |||||||| ||||| | || || Sbjct 87002 TCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATTTCATTGAGATCA 86943 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTGATCTCC 145980 || |||||||| || | || || | ||| || || ||||||| | | || Sbjct 86942 GCGGGGTTCCACGCCGACAGCACAA---TCCGGCGGTCAGTGGGGTTCGTACGCAGCTTG 86886 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCAC 146039 |||| || ||||||||||||||| || || || || | | || | || | Sbjct 86885 TGAATCACCTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCG-CATGCATGTTCGT 86827 Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 ||| ||| || || || | ||| ||||| || ||||| || || || || || ||| Sbjct 86826 GTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAGATCTCCTACCTC 86767 Query 146100 CCTGTG-CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 || ||| | || || | | | ||| | || || || || ||| |||||||||| | Sbjct 86766 CC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATAT 86708 Query 146159 TGACGCCCCTC-GCGGAGAGC-TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAG 146216 | || || || || ||| | || | | |||| || || |||||||| ||||| Sbjct 86707 GAATATCCTTCTGCTGA-AGCGTGTGTGCACT-CGTGTCGCCACTAATGAACCACAGCAG 86650 Query 146217 CTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 ||| || || || | |||||| |||||||| || ||||||| ||||| Sbjct 86649 CTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGGGAA 86599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590032352465040