Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 327 1e-84 seq290 154 2e-32 seq2038 127 2e-24 seq911 127 2e-24 seq398 102 8e-17 >seq14 Length=111874 Score = 327 bits (362), Expect = 1e-84 Identities = 437/605 (72%), Gaps = 12/605 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 21327 GAGAACCCGAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTAC 21386 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||||||||| ||||| ||||| | ||||||| |||||||| | || | | | || Sbjct 21387 AAGAAGGCCGAGGCTTCGTTTTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAG 21446 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || ||| ||||||| ||||| |||||||| Sbjct 21447 -GACTGGGCGAACCTCTCGGACAACGAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTT 21505 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| ||||| || |||||||| |||||||| |||| | | ||| | || ||||| Sbjct 21506 CGCGGCCAGTGATGGCATCGTAAACGAGAACCTGGCCATGAACTTCAGCAACGAAGTGCA 21565 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| ||||||| || |||||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 21566 GGTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCACTCGGA 21625 Query 116890 AATGTATTCGACCCTCATCGACACGTAC-----GTGCGCTCTTCGGAGGAGAAGCTCCGT 116944 | || ||| ||||| ||||||||| | ||| || |||||| || Sbjct 21626 GGTCTACTCGCTGCTCATTGACACGTACATCAAGGACGCCATT-----GAGAAGGACCAC 21680 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||| || ||||| ||||| || |||||||| | |||| ||| | ||||| || Sbjct 21681 TTGCTGCGTGCCATTGAGACCATCCCGTGCGTGACGAAGAAAGCCAACTGGGCACTCAAG 21740 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||| || | | | | | | | | ||||| ||| |||| ||||| | || ||| Sbjct 21741 TGGTGCGACCCACGTGTGTCGTCATACCCGGAGCGTCTGCTGGCGTTCGCCTCGGTGGAG 21800 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| ||||||| |||||| ||| | |||| || ||||||||||| |||||||||||| Sbjct 21801 GGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATG 21860 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || | ||| |||||||| ||| | | || ||||| |||| ||||| Sbjct 21861 CCTGGTCTCAGCTTCTCGAACGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTC 21920 Query 117185 GCCTG 117189 ||||| Sbjct 21921 GCCTG 21925 >seq290 Length=35206 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | Sbjct 14666 AAGATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCG 14725 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| || || || |||||||| | || Sbjct 14726 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 14784 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 14785 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 14844 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 14845 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 14896 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | | Sbjct 14897 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 14956 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| || || || |||||||| | ||||| Sbjct 14957 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 15015 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 15016 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 15075 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 15076 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 15124 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | | Sbjct 15125 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 15184 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| || || || |||||||| | ||||| Sbjct 15185 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 15243 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 15244 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 15303 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||||||||| ||| |||| Sbjct 15304 CATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCG 15339 >seq2038 Length=6223 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || |||||||| | ||||| || | || Sbjct 612 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 671 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 672 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 731 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 732 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAAC 791 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 792 ATCCAGAAGG 801 >seq911 Length=16908 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| || ||||| | ||||| || | Sbjct 5982 AAGATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 6041 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| || |||||||| | || Sbjct 6042 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGA 6100 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| ||| ||||| |||||||| |||| || || | | ||||| Sbjct 6101 CCAGCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTA 6160 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 6161 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6212 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 6213 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6272 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| || |||||||| | ||||| Sbjct 6273 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6331 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6332 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6391 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 6392 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6440 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 6441 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6500 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| || |||||||| | ||||| Sbjct 6501 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6559 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6560 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6619 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 6620 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 6655 >seq398 Length=29186 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 14314 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 14255 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 14254 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 14195 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 14194 GGTGGTGGC 14186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180391113760