Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq911 145 5e-30 seq290 136 3e-27 seq2038 127 1e-24 seq398 91.5 1e-13 >seq911 Length=16908 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| | Sbjct 6211 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6152 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| |||| |||| ||||||||| ||||| || | |||||||||||| || Sbjct 6151 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6092 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||||| | | | | ||||| || | || || ||| Sbjct 6091 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 6032 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||| || |||||||| ||||| ||||| |||||||||||| Sbjct 6031 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATC 5984 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | |||||||||||| | || || ||||| ||||||||||| Sbjct 6668 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6609 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | ||| |||| |||| ||||||||| ||||| || | |||||||||||| || Sbjct 6608 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6549 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | | | | ||||| || | || || || Sbjct 6548 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6489 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||| || |||||||| ||||| ||||| ||||||||||| Sbjct 6488 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6441 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| | Sbjct 6439 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6380 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| |||| |||| ||||||||| ||||| || | |||||||||||| || Sbjct 6379 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6320 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||||| | | | | ||||| || | || || ||| Sbjct 6319 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 6260 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || |||||||| ||||| ||||| ||||||||||| Sbjct 6259 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6213 >seq290 Length=35206 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| | || || ||||| |||||||||||| | Sbjct 14895 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 14836 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || || || |||||||| | |||| Sbjct 14835 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 14776 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||||| | | | | ||||| || | || || || Sbjct 14775 -ATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 14717 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| | |||||| || ||||| || | || ||||| |||||||||||| Sbjct 14716 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATC 14668 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| | || || ||||| |||||||||||| | Sbjct 15123 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 15064 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || || || |||||||| | |||| Sbjct 15063 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 15004 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||||| | | | | ||||| || | || || || Sbjct 15003 -ATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 14945 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | |||||| || ||||| || | || ||||| ||||||||||| Sbjct 14944 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 14897 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||||||||| || | ||||||||| || | || || ||||| |||||||||||| Sbjct 15352 TCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 15293 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| |||| |||| ||||||||| ||||| || || || |||||||| | ||| Sbjct 15292 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 15233 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||| || ||||| ||||| | | | | ||||| || | || || | Sbjct 15232 G-ATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 15174 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | |||||| || ||||| || | || ||||| ||||||||||| Sbjct 15173 CGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 15125 >seq2038 Length=6223 Score = 127 bits (140), Expect = 1e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| ||||| ||| |||| || | ||||||||| ||||| || Sbjct 799 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 740 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | | ||||||||| || || ||||| | || | | Sbjct 739 AGGCGCTGCTGGTCAGGCGGG-ATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 681 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| || || || || || |||||||| Sbjct 680 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAA 621 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 620 GATCTGCAT 612 >seq398 Length=29186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| ||| Sbjct 14190 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 14249 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 14250 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 14302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048272986560