Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq345 172 1e-37 seq229 140 7e-28 seq14 100 6e-16 seq173 91.5 3e-13 >seq345 Length=31688 Score = 172 bits (190), Expect = 1e-37 Identities = 857/1328 (65%), Gaps = 69/1328 (5%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | || | || ||||| || || | | || ||| || | | Sbjct 12238 GACTTCGAGTACGACTATTTCGGATTTAAAACACTCGAAAGAGGCTACCTCTTCCGAGTG 12297 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||| |||| || || ||||| ||| | ||||| |||||| | || || ||| Sbjct 12298 AATGGCAAAGTCGTCGAGCGGCCGCAGCAAATGATTATGCGCGTGGCTCTGGGCATCCAC 12357 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA----- 248983 ||| |||| || | || ||||||||| || | || ||| | | Sbjct 12358 AAGAGCAACATCCAGGCAGCTCTGGAGACGTAC----GAGTTGATGT-CGCAGAAGTTCT 12412 Query 248984 TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGC 249039 | || |||||||| || |||||||||||||| || || |||| ||||||| | Sbjct 12413 TCACGCATGCCACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCC----TCAGCTGTCC 12468 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 |||||||| | || |||||||| |||||||| | || ||||| || ||||| || || Sbjct 12469 TCGTGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAG 12528 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 ||| ||| || || |||| || || || || || || | |||||||||| Sbjct 12529 CAGTGTGCGTGCATCTCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGA 12588 Query 249160 GCGA---AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCC 249214 || | | ||| ||||| ||| || || || || || |||| ||| | || Sbjct 12589 GCCACTAACAGTT---ACATCCGAGGCACGAACGGC-TC-GTCCAATGGCATCATCCCAA 12643 Query 249215 TCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGG 249271 | || || ||| | ||| || ||| | | |||||| ||| || || || | Sbjct 12644 TGCTGCGGGTGTTTAACGACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAG 12703 Query 249272 GGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGA 249331 | |||||||| || || ||||| |||||| || || | || |||||| ||||| | Sbjct 12704 GATCGTTCGCTATCTACTTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTAC 12763 Query 249332 AAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCT 249391 |||||| ||||||||||| | | || |||||| | ||||||| ||||||||| Sbjct 12764 GTAAGAACCACGGCAACGAGTTGCACCGTGCTCGTGACTTGTTCTACGCTCTGTGGGTCC 12823 Query 249392 CCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCC 249450 | || |||||||| ||||| | ||| | ||| | |||| | || || | ||| Sbjct 12824 CTGATCTGTTCATGAAACGCGTGGAAGCCAATGGCAAGTGGA-GTTTGTTCTGTCCCAAT 12882 Query 249451 GACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAAT 249508 || || || | |||| ||| || | ||| || || || || || |||| | Sbjct 12883 GAAGCTCCTGGCCTCTACGAGTGCTGGGGAGACGAGTTTGA--AACTCTCTACGAGAAGT 12940 Query 249509 ACGA-ATCCAACGGCAT-CG-GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGG 249562 |||| | | | | | || ||||||| ||||| || | | || || ||| Sbjct 12941 ACGAGAAGGAGGGACGTGCGCGCAAGACGATCAATGCACAGCAGCTGTGGTTCTCGA--- 12997 Query 249563 TGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAAC 249621 | |||| | ||||| ||||| || | ||| | | || ||| ||| |||||| |||| Sbjct 12998 TCTTGGACGCGCAGATTGAGACGGGTGTGCCCT-TCATGCTGTACAAGGACGCGGCCAAC 13056 Query 249622 GCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGT 249680 |||| ||||| | | || | || || |||||||| || | || ||| ||||| Sbjct 13057 CGCAAGTCCAACCAGCAGAATTTGGGCACGATCCGCTCCAGTAACTTGTGCTGC-GAGGT 13115 Query 249681 GATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGT 249740 ||| | ||| |||| ||| ||| | || || |||||| |||| | | | | | | Sbjct 13116 GATGGAGTACACGTCGCCGGATGAGGTGGCGGTGTGCAACTTGGCGTCCGT--AGCAC-T 13172 Query 249741 GAGGCACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGAC--GGCGAAA 249798 | | | || |||| | ||| ||| | || || || ||| | | || Sbjct 13173 GCCTAAATTCGTGGAGGACGGAGTTTTCAACTACCAGAAGCTCTAC--GACGTGACTAAG 13230 Query 249799 CAGGCGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCC---CCTTGAGGAA 249855 || || | || |||||||||||||| || |||| | |||||| | | |||| Sbjct 13231 GTGGTGACCCGTAATCTCAACAAGGTGATCGACATCAACTATTACCCAGTCGTGGAGGCT 13290 Query 249856 TGCAGGTTGTCCAACATGAAGCACCGTCCATGTGGG-CTGGGCGTTCAGGCACTGCACGA 249914 ||| |||||||||| ||||| || |||||| | || ||||||| ||| ||| Sbjct 13291 CGCA---AGTCCAACATGCGCCACCG-CCCTGTGGGTATTGGTGTTCAGGGTCTGGCCGA 13346 Query 249915 CGTCTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGC-AGCGACGCTAAATAAAC 249973 || | ||| | ||| | | | ||||| || |||| |||| ||| || || Sbjct 13347 CGCTTTCATCCTCATGAACTACGCGTTCGAAAGCGAACAGGCTCGCGA-GCTGAACAAGA 13405 Query 249974 AGATTTTCGAGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCG 250033 | ||||||||||||||||| | | | | ||| ||||||| || | |||||| Sbjct 13406 ACATTTTCGAGACCATCTACTATGCGTCAATGGAGACGTCCATGGAGATTGCCAAGGAGC 13465 Query 250034 ACGGACCATACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTT-CAGTTTGAT 250092 || || ||||||| || ||||| ||||| || | || ||| | ||| ||||| || Sbjct 13466 TGGGCCCTTACGAGACGTTCCAGGGCTCGCCTGC-TAGTAAGGGTATCTTCCAGTTCGAC 13524 Query 250093 CTTTGGGG 250100 | ||||| Sbjct 13525 ATGTGGGG 13532 >seq229 Length=54404 Score = 140 bits (154), Expect = 7e-28 Identities = 263/382 (69%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| ||||| ||| |||| ||||| || || ||||||||||| ||||| |||| Sbjct 4248 CTGCCTCACTTGCTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCTACCATTGTGGCT 4307 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || | | || | ||| | | ||||||||| Sbjct 4308 GTGGGGCGCCAACTCTTTGGCTCGGATTTCCGCAAGAACGGCCGCTTCTTGGAGCTGAAC 4367 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || ||||| ||| | |||| ||| || || | Sbjct 4368 GCGTCGGATGACCGGGGCATTAAGGTGGTGCGCGAGAAGGTAAAGAGCTTCGCCCAG--G 4425 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 || || | | | | | ||| ||||| |||||| || | | ||||| ||||| Sbjct 4426 GCGCCATCAGCACTGCCAGTGGCCTG-CCGCCCTTCAAGATCATCGTACTGGATGAGGCT 4484 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTT 254297 ||| | ||||||| |||||||||||| ||||| || || | |||||||| ||||| Sbjct 4485 GACTCGATGACGGGCGACGCGCAGTCAGCCCTACGTCGCATGATGGAGAACTACTCCAAG 4544 Query 254298 GTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTT 254355 || ||||| |||||||| | || |||||||| |||| || |||| || |||| | Sbjct 4545 GTCACGCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATTATCGAGCCCGTGGCCT 4602 Query 254356 CTCGGTGCGCCAAGTTTCGATT 254377 | || |||||||| || || || Sbjct 4603 CGCGATGCGCCAAATTCCGTTT 4624 >seq14 Length=111874 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 22211 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22152 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| | || ||| | |||| ||||| || |||| Sbjct 22151 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACG 22092 Query 157378 GTCCGCCACAAACTTGATGTACT 157400 ||| ||||| |||| |||||||| Sbjct 22091 GTCAGCCACGAACTCGATGTACT 22069 >seq173 Length=44675 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 ||||| ||||| |||||||| || ||||||||||||||| | | |||||||| ||| Sbjct 37417 CTCTGGATCGGCTCGATGATCTTCGTGGAGTTGTTGCAGGCCAGCGCAAACCGCGTGGTG 37476 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | |||||||||||||| || | | ||||| ||||| Sbjct 37477 GCCGAGAAGATCTCCATCGTGCGTCGCAGCGCCTGCTGGGCCGCGGACGTCATGGAGTCC 37536 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 |||||||| || | || ||||| Sbjct 37537 GCCTCGTCCAGGATCACGATCTT 37559 Score = 91.5 bits (100), Expect = 3e-13 Identities = 167/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 254103 GTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG 254162 ||||| ||||| || || || ||||| ||||| | ||| ||| ||| |||||||||| Sbjct 37661 GTGCTGGAGCTCAATGCGTCCGACGACCGCGGCATCGACACCGTGCGCAGCAAGATCAAG 37602 Query 254163 ACTTTCTCCAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTG 254222 | ||| | || | | | || | || |||| | |||| |||| ||||| Sbjct 37601 ATGTTCGCGCAGCAGAAGGTGACGCTG--CCT--CCGGGT---CGCCA--CAAGATCGTG 37551 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 |||||||||||||||||| |||||||| ||| || ||| || || || || |||||| Sbjct 37550 ATCCTGGACGAGGCGGACTCCATGACGTCCGCGGCCCAGCAGGCGCTGCGACGCACGATG 37491 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 |||| ||| | ||||| ||| |||| |||||| || ||||||||||| Sbjct 37490 GAGATCTTCTCGGCCACCACGCGGTTTGCGCTGGCCTGCAACAACTCCACGAAGATCATC 37431 Query 254343 G 254343 | Sbjct 37430 G 37430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073683496509568