Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq911 141 7e-29 seq2038 129 5e-25 seq290 118 8e-22 >seq911 Length=16908 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 6193 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCC 6134 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || || ||||| |||||||| || | || ||||||||| Sbjct 6133 AGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 6074 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 6073 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 6014 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||||||||||||| ||||| ||||| ||| Sbjct 6013 CCGGTCAGAGTCTTCACGAAGATCTGCATCTTG 5981 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 6421 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCC 6362 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || || ||||| |||||||| || | || ||||||||| Sbjct 6361 AGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 6302 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 6301 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 6242 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 6241 CCGGTCAGAGTCTTCACGAAGATCTGCATG 6212 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 6649 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCC 6590 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || || ||||| |||||||| || | || ||||||||| Sbjct 6589 AGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 6530 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| |||| || ||||||||| Sbjct 6529 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 6470 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 6469 CCGGTCAGAGTCTTCACGAAGATCTGCATG 6440 >seq2038 Length=6223 Score = 129 bits (142), Expect = 5e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| ||| ||| |||| || || || || |||||||| | Sbjct 801 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 742 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 741 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 682 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || ||||| |||||||| |||||||||| Sbjct 681 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAA 622 Query 45327 AGATTTGCATG-TTGCCT-CAATAC 45349 |||| |||||| || ||| |||||| Sbjct 621 AGATCTGCATGATTCCCTGCAATAC 597 >seq290 Length=35206 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 15105 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCC 15046 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || || ||||| || || | || ||||| || | Sbjct 15045 AGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGA 14986 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | || ||||||||| Sbjct 14985 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTG 14926 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 14925 CCCGTCAACGTCTTCACGAAGATCTGCATG 14896 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 14877 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCC 14818 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || || ||||| || || | || ||||| || | Sbjct 14817 AGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGA 14758 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | || ||||||||| Sbjct 14757 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTG 14698 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||| ||||| ||||| || Sbjct 14697 CCCGTCAACGTCTTCACGAAGATCTGCATCTT 14666 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 15333 ACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCC 15274 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || || ||||| || || | || ||||| || | Sbjct 15273 AGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGA 15214 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | || ||||||||| Sbjct 15213 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTG 15154 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 15153 CCCGTCAACGTCTTCACGAAGATCTGCATG 15124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395046184936546