Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq32 113 9e-20 >seq32 Length=91914 Score = 113 bits (124), Expect = 9e-20 Identities = 416/632 (66%), Gaps = 20/632 (3%) Strand=Plus/Plus Query 35157 GAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACG 35216 |||| ||||| || || || || ||||||| | || ||||| || ||| | || Sbjct 86534 GAACGGGAACGGGGACGCTGTCGGTTTTTGGGGCTCAGATGAGATTTAGTCTGAGGAACA 86593 Query 35217 ACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTC 35275 | |||||| ||| || || || |||| | |||||| |||| || | ||| || || Sbjct 86594 ATG-TATTCCCGTTGCTGACGACTAAGAGGGTATTCTGGCGAGGTGTGGCGGAGGAGCTG 86652 Query 35276 TCGTGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTGGCCAAGAAGAAGATACACAT 35334 ||||||||| || ||| | || || || | || || |||| | || || || Sbjct 86653 CTGTGGTTCATTAGTGGCGACACGAGTGCACACACGCTTCAGCA-GAAGGATATTCATAT 86711 Query 35335 CTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGA 35394 |||| ||| ||||| ||||| || | ||||||||||||| || | | | | Sbjct 86712 CTGGGACGGCAATGGATCGCGTGAGTACCTGGACAGTAGAGGATTGCAGTCACGGGAGGT 86771 Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAAT--ATGAT 35452 |||||| | ||||| || || || ||||||||||| ||||||||||| ||| | || Sbjct 86772 AGGAGATCTTGGACCGGTCTATGGTTTCCAATGGCGCCATTTTGGTGCCAAATACACGA- 86830 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 || || | | || |||||||| | || | || || | || | | | | | Sbjct 86831 ACATG-CATGCGGACTATACTGGCCAAGGCGTGGACCAGCTCGCAGAGGTGATTCACAAG 86889 Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572 ||| | || || ||| | |||| | || |||| ||||| || ||||| Sbjct 86890 CTGCGTACGAACCCCACTGACCGCCGGATTGTGCTGTCGGCGTGGAACCCCGCTGATCTC 86949 Query 35573 CACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGA 35631 | ||||| || || || ||||||||| |||| || || || ||||| | || || Sbjct 86950 AATGAAATGGCGCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCAGACGGTGA 87008 Query 35632 ATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAAT 35689 |||||||||||| |||| ||||| || || ||| || | ||||| || ||||| Sbjct 87009 GTTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATG--GGACTCGGCGTACCATTCAAC 87066 Query 35690 ATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGG 35748 || || ||| | || || || | |||| || ||| ||| || || ||||| || Sbjct 87067 ATCGCCAGCTACGCGCTGCTAACGCGATTGATAGCGCAG-GTGGCAGGACTGAAACCTGG 87125 Query 35749 AGAGTTTATCCTCA-CTC-TTGGTGACGCACA 35778 |||||| | ||| || | ||||||||||| Sbjct 87126 CGAGTTTGT--TCATGTCATCGGTGACGCACA 87155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989507596074830