Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq345 127 3e-24 >seq345 Length=31688 Score = 127 bits (140), Expect = 3e-24 Identities = 459/716 (64%), Gaps = 4/716 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| |||||||||||||| | || | |||||| ||||| ||||| | ||| Sbjct 12924 TTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAACT 12865 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| || | | | ||| |||||||| || |||||||| | ||| ||||| || Sbjct 12864 CCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGAA 12805 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || | | | || |||||| || ||||| || || | |||| | | Sbjct 12804 CAAGTCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTCGAA 12745 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| ||||||||| |||||||| || || | ||| |||||| ||| || Sbjct 12744 GACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCGCC 12685 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | ||| |||| ||| | || | || |||||| || || |||||||| Sbjct 12684 CTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTGGA 12625 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGA 66338 | || || || || ||| || || | | || || || | | | | |||| Sbjct 12624 CGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT--G 12567 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || ||||| ||| ||| ||||| | || || | || | || || ||||||||| Sbjct 12566 CCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCCC 12507 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || || || ||| |||| || | || || |||| || |||| ||| Sbjct 12506 TCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGTG 12447 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || || || || | || |||| || ||||| || | || | || | | | |||| Sbjct 12446 CCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTAC 12387 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 ||||| | ||||| | || | | | || || || | || || ||||| | ||| Sbjct 12386 GTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGCCACGCGCATAATCATT 12327 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 ||||| || | || |||| ||| || | | || | |||| | |||| | ||| Sbjct 12326 TGCTGCGGCCGCTCGACGACTTTGCCATTCACTCGGAAGAGGTAGCCTCTTTCGAGTGTT 12267 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||||| || ||||||| ||| ||||| || |||| || || | |||||||| Sbjct 12266 TTAAATCCGAAATAGTCGTACTCGAAGTCCCGATCGTGGATGATTGCGGAGTTGAG 12211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658123223133840