Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq345 145 1e-29 >seq345 Length=31688 Score = 145 bits (160), Expect = 1e-29 Identities = 465/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| |||||||||||||| |||| | |||||| ||| | ||||| | ||| Sbjct 12924 TTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAACT 12865 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||||| |||| | | || |||||||| || |||||||| | ||| ||||| || || Sbjct 12864 CCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGAA 12805 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || || | | | ||| |||||| || ||||| || || | |||| | | Sbjct 12804 CAAG-TCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTCGA 12746 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | |||| ||||||||| |||||||| || || | ||| |||||| ||| | Sbjct 12745 AGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCGC 12686 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||| | ||| |||| ||| | || | || |||||| || || ||||||| Sbjct 12685 CCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTGG 12626 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 | | || || || || ||| || || | |||| || || | | | | |||| Sbjct 12625 ACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT-- 12568 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || ||||| ||| ||| ||||| | || || | || | || || |||||||| Sbjct 12567 GCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCC 12508 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| ||| || || |||| || | || || |||| || |||| ||| Sbjct 12507 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGT 12448 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || || || || | || |||| || ||||| || | || | |||| | | ||| Sbjct 12447 GCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTA 12388 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 |||||| | ||||| | || | | | || || || | || || ||||| | ||| Sbjct 12387 CGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGCCACGCGCATAATCAT 12328 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || |||| ||| ||| | | || | ||| | |||| | || Sbjct 12327 TTGCTGCGGCCGCTCGACGACTTTGCCATTCACTCGGAAGAGGTAGCCTCTTTCGAGTGT 12268 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 |||||| || ||||||| ||| ||||| || |||| || || | |||||||| Sbjct 12267 TTTAAATCCGAAATAGTCGTACTCGAAGTCCCGATCGTGGATGATTGCGGAGTTGAG 12211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214696402640