Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq345 158 2e-33 >seq345 Length=31688 Score = 158 bits (174), Expect = 2e-33 Identities = 470/718 (65%), Gaps = 8/718 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||| |||||||||||||| ||| | || | |||||| |||||| ||||| | ||| Sbjct 12924 TTCAAACTCGTCTCCCCA-GCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAAC 12866 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 ||||| |||| | | || |||||||| || |||||||| | ||| ||||| || | Sbjct 12865 TCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGA 12806 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 | || || | | | ||| |||||| || ||||| || || | |||| | Sbjct 12805 ACAAG-TCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTCG 12747 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | |||| ||||||||| |||||||| || || | ||| |||||| ||| Sbjct 12746 AAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCG 12687 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | ||| |||| ||| | || | || |||||| || || |||||| Sbjct 12686 CCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTG 12627 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATA 72298 || | || || || || ||| || || | |||| || || ||| || |||| Sbjct 12626 GACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGATG 12567 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || ||||| ||| ||| ||||| | || || | || | || || ||||||| Sbjct 12566 --CCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGC 12509 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || ||| |||| || | || || |||| || |||| || Sbjct 12508 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAG 12449 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | || || || || | || |||| || ||||| || | || | |||| | | || Sbjct 12448 TGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGT 12389 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| | ||||| | || | | | || || || | || || ||||| | || Sbjct 12388 ACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGCCACGCGCATAATCA 12329 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || |||| ||| ||| | | || | |||| | |||| | | Sbjct 12328 TTTGCTGCGGCCGCTCGACGACTTTGCCATTCACTCGGAAGAGGTAGCCTCTTTCGAGTG 12269 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||||||| || ||||||| ||| ||||| || |||| || || | || ||||| Sbjct 12268 TTTTAAATCCGAAATAGTCGTACTCGAAGTCCCGATCGTGGATGATTGCGGAGTTGAG 12211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088646439760