Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq290 87.8 1e-12 >seq290 Length=35206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| ||||| |||||||| || || || ||||| || || | || | | Sbjct 15339 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 15280 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 15279 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 15220 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 15219 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 15160 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| | || || ||||| || |||||| Sbjct 15159 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 15124 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| |||||||| || || || ||||| || || | || | | Sbjct 15111 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 15052 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 15051 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14992 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 14991 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 14932 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| | || || ||||| || |||||| Sbjct 14931 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 14896 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| |||||||| || || || ||||| || || | || | | Sbjct 14883 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 14824 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 14823 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14764 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 14763 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 14704 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||||| | || || ||||| || ||||| || Sbjct 14703 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATCTT 14666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318754188375348