Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq32 109 4e-19 >seq32 Length=91914 Score = 109 bits (120), Expect = 4e-19 Identities = 370/563 (66%), Gaps = 19/563 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || || || ||||| | || || || || ||||| || | || Sbjct 87194 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 87135 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || |||| || || | || | || |||| ||| || || |||| Sbjct 87134 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 87075 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || ||||| |||| ||||||| | |||| | |||||| | ||| || Sbjct 87074 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGGCA 87016 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||| | ||| |||| |||||| ||||| || | ||| |||||| || || || || Sbjct 87015 CGACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCAT 86956 Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GT 25711 | || |||||||| || ||| | || | | ||| ||||| || Sbjct 86955 TTCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGT 86896 Query 25712 CC----CTGATAAGATCCGCGGTGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 25766 | || | | ||| | | ||| ||||| ||||| || || | ||||| Sbjct 86895 ACGCAGCTTGTGA-ATCACC-----TCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTC 86842 Query 25767 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCC 25826 || ||||| |||||| | || || |||| | ||| ||||| || || |||||||| Sbjct 86841 CGCATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCC 86782 Query 25827 TAGGTCTCCATCTTCCCTGTG-CTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 || ||||| | |||| ||| || || || || | |||| | || | || |||| Sbjct 86781 AAGATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCAT 86723 Query 25886 TGGCGTCCCAGATCTTTACCCCCTTCT-CGGAGAGC-TCTTTGGAGTTTGTGGACCCTCT 25943 || |||||||||| | | |||||| | || ||| | | || | | ||| || || Sbjct 86722 TGCCGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACT 86665 Query 25944 GACGAACCACAGCAGCTCCGCCG 25966 | |||||||||||||||| ||| Sbjct 86664 AATGAACCACAGCAGCTCCTCCG 86642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340112619656898