Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq911 100 2e-16 seq2038 86.0 5e-12 >seq911 Length=16908 Score = 100 bits (110), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||| ||| || |||||||||||||||| ||| || | Sbjct 6176 CTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6117 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||||| |||||||| || ||| | | |||||||||| ||||||||||| | | Sbjct 6116 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6057 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | | |||| || | || || || || ||||| ||||| ||| Sbjct 6056 GTCG--ATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTC 5999 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 5998 ACGAAGATCTGCATCTTG 5981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||| ||| || |||||||||||||||| ||| || | Sbjct 6404 CTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6345 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||||| |||||||| || ||| | | |||||||||| ||||||||||| | | Sbjct 6344 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6285 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | | |||| || | || || || || ||||| ||||| ||| Sbjct 6284 GTCG--ATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTC 6227 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 6226 ACGAAGATCTGCAT 6213 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||| ||| || |||||||||||||||| ||| || | Sbjct 6632 CTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6573 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||||| |||||||| || ||| | | |||||||||| ||||||||||| | | Sbjct 6572 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6513 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | | |||| || | || || || || ||||| ||||| ||| Sbjct 6512 GTCG--ATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTC 6455 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 6454 ACGAAGATCTGCAT 6441 >seq2038 Length=6223 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | || || ||||||| |||||||| ||| || | | Sbjct 801 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 742 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 741 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 682 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || || || ||||||| Sbjct 681 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAA 622 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 621 AGATCTGCAT 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421220262522026