Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq911 118 1e-21 seq290 113 4e-20 seq2038 84.2 2e-11 >seq911 Length=16908 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | || |||| ||||| ||||| || || ||||| || | ||| || || || Sbjct 6668 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6609 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || ||||||||||| || ||| | |||||||||| ||||| || || || Sbjct 6608 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6549 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| ||||| | ||||| ||| ||| | ||| | ||| | | || || Sbjct 6548 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6489 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| | |||||| || || || || ||||| ||||| ||||||||||||| Sbjct 6488 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGC 6439 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || |||| || Sbjct 6427 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCG 6368 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | |||||||||| ||||| || || || || ||||| ||| Sbjct 6367 TCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTG 6308 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || ||||| | |||||| Sbjct 6307 TCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATC 6248 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||| ||||| ||||||||||||| Sbjct 6247 GTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGC 6211 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || |||| || Sbjct 6199 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCG 6140 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | |||||||||| ||||| || || || || ||||| ||| Sbjct 6139 TCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTG 6080 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || ||||| | |||||| Sbjct 6079 TCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATC 6020 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||| ||||||||||| Sbjct 6019 GTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 5985 >seq290 Length=35206 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| |||| | Sbjct 15111 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 15052 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | |||||| || || || || ||||| || Sbjct 15051 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14992 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | || ||||||| |||||| Sbjct 14991 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 14932 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||| ||||||||||||| Sbjct 14931 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGC 14895 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || ||||||| |||| | Sbjct 14883 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 14824 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | |||||| || || || || ||||| || Sbjct 14823 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14764 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | || ||||||| |||||| Sbjct 14763 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 14704 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||| ||||||||||| Sbjct 14703 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 14669 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||| || || ||||| || | ||| || ||||||| |||| | Sbjct 15339 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 15280 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | |||||| || || || || ||||| || Sbjct 15279 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 15220 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | || ||||||| |||||| Sbjct 15219 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 15160 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||| ||||||||||||| Sbjct 15159 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGC 15123 >seq2038 Length=6223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 766 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTG 707 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || ||||| | ||||||| Sbjct 706 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATG 647 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || ||||| || || || |||||||||||||||||| || Sbjct 646 GTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCATGATT 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257432465360