Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq72 136 6e-28 seq53 127 3e-25 >seq72 Length=67061 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 34959 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 34900 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 34899 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 34840 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || | || ||| || || Sbjct 34839 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 34780 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || ||||| || Sbjct 34779 GCACGCTCGCCGCAAAACGGTGACGGCCATGGACGTCGTGTACGCTCTCAAGCGTCAGGG 34720 Query 16672 CCG 16674 || Sbjct 34719 ACG 34717 >seq53 Length=75336 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 578 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 637 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || |||||||| || || ||||| |||| || | |||| || |||| Sbjct 638 CCGCCGTCTCGCACGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 697 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || | || ||| || || Sbjct 698 CCGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 757 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || ||| | || || || || Sbjct 758 GCACGCTCGTCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCACTCAAGCGCCAGGG 817 Query 16672 CCG 16674 || Sbjct 818 ACG 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069690386018