Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq345 345 1e-89 >seq345 Length=31688 Score = 345 bits (382), Expect = 1e-89 Identities = 1065/1629 (65%), Gaps = 35/1629 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| ||||| || || | | ||| ||||| |||| ||| ||| |||| || Sbjct 12412 TTCACGCATGCCACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCG 12471 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 12472 TGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAGCAG 12531 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || ||||| || || || ||||| | || ||||| | || || Sbjct 12532 TGTGCGTGCATCTCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGAGCC 12591 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||||||||| || ||||| || | || ||||| | | || ||||| || Sbjct 12592 ACTAACAGTTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCAATGCTGCGG 12651 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || ||||||| |||||||| ||||| || || ||||| |||| Sbjct 12652 GTGTTTAACGACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAGGATCGTTC 12711 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| ||||| || | || ||||| | || || || || ||| Sbjct 12712 GCTATCTACTTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTACGTAAGAAC 12771 Query 363907 ACGGGAAAAGAGGAATTG---CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || || ||| ||| ||||| ||||| ||||||| || || ||||| |||| Sbjct 12772 CACGGCAACGAG---TTGCACCGTGCTCGTGACTTGTTCTACGCTCTGTGGGTCCCTGAT 12828 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | || ||||| |||||||| || | || ||| | || || || | ||| | Sbjct 12829 CTGTTCATGAAACGCGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAATGAAGCT 12888 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | ||| ||||| ||||| | || |||| ||||| ||||| || | Sbjct 12889 CCTGGCCTCTACGAGTGCTGGGGAGACGAGTTTGAAACTCTCTACGAGAAGTACGAGAAG 12948 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||||| || || ||||| || |||||| |||| ||||| | ||| |||| || Sbjct 12949 GAGGGACGTGCGCGCAAGACGATCAATGCACAGCAGCTGTGGTTCTCGATCTTGGACGCG 13008 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||||||||| || |||| ||| ||||||| || || |||||||||||||||| Sbjct 13009 CAGATTGAGACGGGTGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAAC 13068 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| | | || || || | || ||| | || |||| | || || ||||| Sbjct 13069 CAGCAGAATTTGGGCACGATCCGCTCCAGTAACTTGTGCTGCGAGGTGATGGAGTACACG 13128 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | || || ||| || || || ||| | ||||| | || || || || || | Sbjct 13129 TCGCCGGATGAGGTGGCGGTGTGCAACTTGGCGTCCGTAGCACTGCCTAAATTCGTGGAG 13188 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCT 364382 || || ||| || ||||| | || || ||||| | ||| || | || | ||||| Sbjct 13189 GACGGAGTTTTCAACTACCAGAAGCTCTACGACGTGA-CTAAGGTGGTGACCCGTAATCT 13247 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGC 364441 | ||||||| ||||||| || ||||| || | || || || | || || || |||| Sbjct 13248 CAACAAGGTGATCGACATCAACTATTA-CCCAGTCGTGGAGGCTCGCAAGTCCAACATGC 13306 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA 364501 | || ||||| | ||| ||||||| ||||| || || |||| ||| || | | || Sbjct 13307 GCCACCGCCCTGTGGGTATTGGTGTTCAGGGTCTGGCCGACGCTTTCATCCTCATGAACT 13366 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || | ||||| | || || ||| | || || || || || || | Sbjct 13367 ACGCGTTCGAAAGCGAACAGGCTCGCGAGCTGAACAAGAACATTTTCGAGACCATCTACT 13426 Query 364562 TTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||| |||| || | | || ||| ||| | | ||| ||| || | Sbjct 13427 ATGCGTCAATGGAGACGTCCATGGAGATTGCCAAGGAGC-TGGGCCCTTACGAGACGTTC 13485 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 |||| || ||| | |||| | |||||||| || | ||| ||| | || || Sbjct 13486 CAGGGCTCGCCTGCTAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTCTCCCCGTC- 13544 Query 364681 GTCCG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||||| |||||||||| | |||| ||||||| || || |||| || || Sbjct 13545 GTCCGGCCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTTATCAAACACGGTATCCGTAA 13604 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| || | || |||||||| |||||||| ||||| |||||||| || ||||| || Sbjct 13605 CTCGCTACTGGTGGCCCCCATGCCTACGGCTTCGACTGCGCAGATCCTGGGCAACAATGA 13664 Query 364797 GTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCC 364856 || | |||| || | ||| || | || ||||| || ||| | || || || | Sbjct 13665 GTCCATCGAGCCCTACACATCGAACATGTACAACCGCCGTGTGCTTGCTGGTGAGTTCAC 13724 Query 364857 GGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCAT 364916 | | || || ||||||||| | ||||| || ||| | || | || ||| || Sbjct 13725 GATCGTGAACAAGTACCTAATGAAGGAGCTGATCGAGCTGGGCATCTG----GAC-GCCC 13779 Query 364917 GAAG-----AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 || | ||| | ||| | || ||| ||||||||||| || ||| ||| Sbjct 13780 GAGGTTCGCAACCAGATCCTGAACGACGGTGGGTCTGTGCAGAA-GGTCAAGGTCATCCC 13838 Query 364972 GAAGATC-TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCAT 365027 | | | | | ||| | ||||| || || ||||| || || || ||| || | | Sbjct 13839 GGACAACGTAAAGGACAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGTCGGTGCT 13895 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||| || | ||||| || || |||| ||||| ||||| |||||| | ||| | || Sbjct 13896 GGATCTGTCAGCCGACCGTGGCGCTTACATCTGCCAGAGTCAGTCGCTCAACATCCATAT 13955 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 | | || || | |||||| ||||||||||| ||||||| ||||| || || Sbjct 13956 TGCCGACCCGACGATCAGCAAGCTCACATCCATGCACTTCTACGCTTGGAAGAAGGGACT 14015 Query 365148 TAAGACAGG 365156 ||||| || Sbjct 14016 CAAGACGGG 14024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303252970512332