Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq874 145 4e-30 >seq874 Length=16017 Score = 145 bits (160), Expect = 4e-30 Identities = 392/595 (66%), Gaps = 16/595 (3%) Strand=Plus/Plus Query 65459 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCG 65518 ||||||||||| ||||||||||| || || || ||| | || || | ||| | Sbjct 6492 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCT--GGCTCTGAGTT 6549 Query 65519 G--TGGCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCACT 65573 | | || | ||||||||| ||| |||| |||| ||||||||| |||||| Sbjct 6550 GCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCACG 6609 Query 65574 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65633 || | || | | ||||||||||| || || || ||| ||||| ||| || | Sbjct 6610 CCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTCGC 6669 Query 65634 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65693 |||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 6670 AGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGCAG 6729 Query 65694 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 65753 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || | Sbjct 6730 TGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGGTG 6789 Query 65754 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 65813 | || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 6790 AGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAAAT 6849 Query 65814 TCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCG 65870 | || || | | |||| |||| ||| | | | | | |||||| | || Sbjct 6850 TGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCGTC 6906 Query 65871 AGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 65930 ||||| | |||| | | || || | |||| || | || |||| ||| ||| Sbjct 6907 AGAAGGTGGGCATCAT---CTTTGGGTCTCCCGAGGTGACGTCCGGTGGCACGGCGTTGC 6963 Query 65931 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 65990 | | |||||| || || || |||| |||| |||| | || ||||| ||||| Sbjct 6964 GCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGGGCGACC 7023 Query 65991 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 ||| ||||||||| || ||| ||||| | ||||||||||||||| |||| Sbjct 7024 AGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGCC 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238203304617784