Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq197 170 4e-37 seq14 123 5e-23 seq1349 102 2e-16 seq212 98.7 2e-15 >seq197 Length=41850 Score = 170 bits (188), Expect = 4e-37 Identities = 448/672 (67%), Gaps = 40/672 (6%) Strand=Plus/Plus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| |||||||||||||||||||| |||| || | || ||||| || | | || | Sbjct 28463 CTCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCCATGCTGCAGAAGGCTG 28522 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | |||| |||||||||||||| || |||||| |||| || ||||| || ||||| | Sbjct 28523 ACATCCTGCTGCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCGTGGCTGG 28582 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 | |||||| || |||||| || || |||| |||| || || ||||||||||||| Sbjct 28583 AGAACTACCTGACGGGTCTGACCAACGTGACTTCTATCATGGTGTCGCACGACTCTGGCT 28642 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCA 279939 |||| || | || ||| | ||| |||||||| ||| | || |||||| ||| || Sbjct 28643 TCCTTGACACGGTCTGCACCAACATTATTCACTACGAGACCCGTAAGCTGAAGATCTACA 28702 Query 279940 AGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATG 279999 || ||||||||||| ||||||| || || ||||| || ||||| | Sbjct 28703 AG------GGCAACCTGTCCAAGTTCGTGGAGCAGAAGCCCGAGGCTAAGGCTTACTACG 28756 Query 280000 ACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC- 280058 | ||| || | | || |||| ||||| ||||| || || || | | |||| Sbjct 28757 AGCTGGAGTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCCGGTTTCCTTGCTGACATCA 28816 Query 280059 ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGC 280118 | | ||| || || | || || | || || || | | || ||| | | Sbjct 28817 AGAACAAGGGTAAGC-CCATTATTCGTC----TGACG--AACTGTTCGTA--CCAGT-AC 28866 Query 280119 CCCAACA-TCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGA-----ACTC-------A 280163 ||| || | | ||| || ||||| | |||| ||| ||| Sbjct 28867 CCCGGCACTGTCAAGCCGTCGATCAAC---AACATTTCGGTGACGTGCGCTCTGTCGAGC 28923 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || |||| ||| | || ||||| ||||| |||||||| || | ||||| | ||||| Sbjct 28924 CGTATTGCTGTTCTGGGCCCCAACGGTGCCGGTAAGTCGACGATGATCAAGATGCTGACG 28983 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| || | || ||| || | || |||||||| || |||||| | || || Sbjct 28984 GGTGAGGTGGAGCCGAC-GAGCGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTA 29042 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| ||||||||||||||||||||||| ||| ||||| || ||| | ||||| || Sbjct 29043 CGTGGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTCGATGAGACGGCCAACCAGTA 29102 Query 280343 CATTCAGTGGCG 280354 ||| |||||||| Sbjct 29103 CATCCAGTGGCG 29114 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| ||||| |||| || |||||||| || |||||||| | ||||||||| ||| | Sbjct 28113 GGACCTGTGCAACTGCGAGTTCTCGCTTGCCTATGGTGGTATGATTCTGCTGAACAACGC 28172 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || ||||||| || |||| || ||||| ||||||||| || ||||| Sbjct 28173 CCGTCTTCGTCTCAAGCGCGGTCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAA 28232 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || || |||||||||||| | ||||| |||||||| || || || Sbjct 28233 GTCGACGCTGATGCGCGCCATTTCCAACGGCCAGCTGGAGGGCTTCCC 28280 >seq14 Length=111874 Score = 123 bits (136), Expect = 5e-23 Identities = 528/820 (64%), Gaps = 16/820 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| |||||||| | ||||| ||||||| ||||| || Sbjct 22192 TCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 22133 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 | | ||| ||||| || |||| ||| | ||| ||||| ||||| ||||| | Sbjct 22132 ACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGA--CGGTCAGCCACGAACTCGA 22075 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| | ||| ||| | ||||| Sbjct 22074 TGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCACAC 22016 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | || || | || | | || || || ||| || | | ||| | | | | Sbjct 22015 ACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATGCACACGGCTCTCCGGC 21956 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 || ||||| ||||||| ||||||| ||| | | || | ||||| ||||| || Sbjct 21955 AGTTTGTTGACCAGCTTGGAGTACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCA 21896 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| | |||||| || | | || |||||||| | || || ||| |||||||| Sbjct 21895 CGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAG 21836 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | ||| ||||| || ||||| | | ||||| || | | | || | || Sbjct 21835 AAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCGAGGCGAACGCCAGCAGA 21776 Query 251980 CGCTCAGCAAACGAC--TTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| | | ||| | || | | | |||| ||||||| | || ||| || Sbjct 21775 CGCTCCGGGTATGACGACACACGTGGGTCGCACCACTTGAGTGCCCA-GTTGGCTTTCTT 21717 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCGTCCT 252094 | ||| ||||| || || || ||| | || || | ||| ||| |||||| Sbjct 21716 CGTCACGCACGGGATGGTCTCAATGGCA-CGCAGCAAGTGGTCCTTCTCAATGGCGTCCT 21658 Query 252095 CGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCT 252154 |||| || |||| || || ||||| | |||||| |||||| ||| || |||| Sbjct 21657 TGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCAATCT 21598 Query 252155 GGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 || | | ||||| || || || | ||||| || ||||| | || | Sbjct 21597 GGAAGCCGTAGAAGCAGCGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCA 21538 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| | || |||||||| ||| | || || ||| | || | ||||| ||||| Sbjct 21537 GGTTCTCGTTTACGATGCCATCACTGGCCGCGAAAAAGGCGAGCACATGCTTGACGAAGT 21478 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 ||||||| | ||| ||| || | |||||| | ||| || ||| | | Sbjct 21477 GACGCTCGTTGTCCGAGAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGGTCCAGCT 21421 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || ||||||| || | | | | |||||||||||||| Sbjct 21420 CCTCGGCCGTCCAAAACGAAGCCTCGGCCTTCTTGTACAT 21381 >seq1349 Length=11778 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 10618 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 10559 Query 142563 CCCCAC 142568 |||||| Sbjct 10558 CCCCAC 10553 >seq212 Length=40772 Score = 98.7 bits (108), Expect = 2e-15 Identities = 202/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||| | ||||||| || ||||| ||||| ||||| ||||| || || Sbjct 30391 AAGGTGGCACAGCTGGCTGGTTACGTGTCCGAGCATTCTGCATACCACCACGGCGAACAA 30332 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || ||||||| || || ||||||||||| | ||| || || |||||||| || Sbjct 30331 AGCTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTTGTCGGAAGCAACAACATCCAC 30272 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 | || || | ||||||||| ||| | ||| | |||| || |||||| || | Sbjct 30271 CTTCTATCGCCTATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCGGCCAGT 30212 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA---TCAGGCC 218892 || | || || || || || ||| || | ||||| | | | | | || || | Sbjct 30211 GCTCGTTACATTTTCACCAACTTGGAGCAACTCACGCGTCGAATCTACGATCCTCTGGAC 30152 Query 218893 GATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTA 218951 ||||||||||| |||||| | || || || || ||||| ||||| |||||||| Sbjct 30151 AATGATGTGCTC---AAGTATTTGGATGAAGACGGCCAGTCGATCGAGCCAGAGTGGTA 30096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027757442647866