Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq911 123 6e-23 seq290 123 6e-23 seq2038 111 4e-19 seq196 89.7 1e-12 seq212 87.8 4e-12 >seq911 Length=16908 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || || ||||| || ||||| Sbjct 6668 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6609 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| || ||||| || | || || || |||||||| | ||||| || || Sbjct 6608 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6549 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || |||||||||||| |||||||| || || || || || || || Sbjct 6548 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6489 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6488 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6441 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 6215 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 6157 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || ||||| || | || || || |||||||| | ||||| || Sbjct 6156 CACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGG 6097 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||||||| |||||||| || || || || || | Sbjct 6096 GCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 6037 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6036 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 5985 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 6443 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 6385 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || ||||| || | || || || |||||||| | ||||| || Sbjct 6384 CACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGG 6325 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||||||| |||||||| || || || || || | Sbjct 6324 GCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 6265 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6264 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6213 >seq290 Length=35206 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || ||||| | ||| || || ||||| || |||||| Sbjct 15352 TCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 15293 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || ||||||||||| || || || | || Sbjct 15292 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 15233 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| ||||| || || ||| |||||||| || || || || || || || Sbjct 15232 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15173 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || |||| ||||| ||||| |||||||| Sbjct 15172 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 15125 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| ||||| || | || || || |||||| Sbjct 14859 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 14800 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || || || | ||||| ||||| ||||| || || ||| |||||||| Sbjct 14799 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 14740 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || |||||||||||||| || |||| ||||| ||| Sbjct 14739 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 14680 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 14679 AAGATCTGCAT 14669 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| ||||| || | || || || |||||| Sbjct 15087 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 15028 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || || || | ||||| ||||| ||||| || || ||| |||||||| Sbjct 15027 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 14968 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || |||||||||||||| || |||| ||||| ||| Sbjct 14967 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 14908 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 14907 AAGATCTGCAT 14897 >seq2038 Length=6223 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| ||||| || | || || || ||||||||| Sbjct 799 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 740 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | |||||||| || || |||||||||||| || || || || Sbjct 739 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 680 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 679 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 620 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 619 ATCTGCATGAT 609 >seq196 Length=72114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | ||| || |||||| || || |||| || | |||||||||||| Sbjct 58782 ATATACCGAGGACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGGCCTGAT 58723 Query 325382 GGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || |||| ||| | | ||| ||| || || | ||||| || | ||| || || || Sbjct 58722 GGATACAA-CAGCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAACAATCGT 58664 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTG 325498 | |||| || ||||| || |||||||| || | |||| ||||| |||||| | Sbjct 58663 CGAATGCAACGAAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCA--GTAACCCGCG 58606 Query 325499 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTT--GAAAGCTGAATATATCACTT 325556 | ||| || |||||||| ||| | |||| ||||||| || || || | | ||| | Sbjct 58605 AGCTGCGCCACCTTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGA--AAAGCACCT 58548 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 |||| || ||| || | |||||| || ||||| || Sbjct 58547 TCCGCTGCGAAATCTTAAGACCATCGACCACCGATGG 58511 >seq212 Length=40772 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || || || ||||| || |||||| || ||| ||| | || ||||||||| || Sbjct 30201 ATGTAACGAGCACTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATA 30260 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 ||| | | || |||||| |||||||||||| |||||||||| | |||||||| Sbjct 30261 GGCGATAGAAGGTGGATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAG 30320 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAAC 325501 || |||| | |||||| ||||| || || |||||| | |||||||| | | Sbjct 30321 CCCTGCAAGCTTTGTTCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGC 30380 Query 325502 TGTGCAACCTT 325512 ||||| ||||| Sbjct 30381 TGTGCCACCTT 30391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179563321095628