Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq345 242 4e-59 seq14 138 1e-27 seq196 109 7e-19 >seq345 Length=31688 Score = 242 bits (268), Expect = 4e-59 Identities = 1085/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| ||||||||||| |||| |||||| || || | ||||| || | | ||| Sbjct 14034 GTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT 13975 Query 113662 GGAGAGTGTTGG------ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-A 113714 | || || || | | | ||| ||| | ||| ||| | |||| | Sbjct 13974 GCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCA------GATGTA 13921 Query 113715 AGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 113774 |||| ||||| || || | || ||| | ||| |||| |||||| |||||||| || Sbjct 13920 AGCG-CCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCT 13862 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 |||| || ||| | | || ||||| || || || || | || ||||| | | Sbjct 13861 TGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGT 13802 Query 113835 TGACCATGAGATCCTTCATATCCTTTGAC---CAGAGACCAATCTTTTTGAGATCCTCCA 113891 | || || | || | ||| | | |||| || | || | || |||| || Sbjct 13801 T---CAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCA 13745 Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 || | ||| || || | |||||||| || || || | || || || | Sbjct 13744 TTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCG 13685 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 ||||| ||||| | | |||||||||| |||| ||| || || || || || || |||| Sbjct 13684 ATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCA 13625 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 |||| |||| || || |||||||| ||| | || ||| | ||||| || || Sbjct 13624 TGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAG 13565 Query 114072 CCCAGT--CGTAGTT--GA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 |||||| | || || | | | || |||||| || ||||||| |||||| Sbjct 13564 CCCAGTTCCACAGGCCGGACGACGGGGAGACGCC--CCACATGTCGAACTGGAAGATACC 13507 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAAT-TC 114183 | || ||||| |||| || |||||||| |||||| | |||| | |||| || Sbjct 13506 CTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC---AGCTCCTTGGCAATCTC 13450 Query 114184 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 114243 | || ||| | | || | || || ||||| |||||| |||| | Sbjct 13449 CATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCG 13390 Query 114244 GGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGG 114301 |||| ||| || |||||| ||| || | || || | || || ||||| || Sbjct 13389 AGCCTGTTCGCTTTCGAACGCGTAGTT--CATGAGGATGAAAGCGTCGGCCAGACCCTGA 13332 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGA 114358 ||||| | || | ||||| || | ||| || ||||| ||||| ||||||| || Sbjct 13331 ACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC---CTCCACGACTGGG 13275 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 ||| | || | ||||| ||| | || ||||| ||| || ||||| || | || | Sbjct 13274 TAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAGTCACGTCGTAG 13215 Query 114419 AGCTTTTCGTAATC-AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 ||||| | ||| | |||||| || || | || | ||||| || || | || Sbjct 13214 AGCTTCTGGTAGTTGAAAACTCCG-------TCCTCCACGAATTTAGGCAGTGCTACGGA 13162 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 ||||| || ||||| | ||||||| |||||||| || | || ||||| Sbjct 13161 CGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCACAA 13102 Query 114538 ATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 || || | || |||||||| |||| || || ||||| ||| ||| ||| Sbjct 13101 GTTACTGGAGCGG--ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCC 13044 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 114655 ||||| |||||| | ||| |||||||| | || | | | || | ||| | Sbjct 13043 TTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACA-- 12986 Query 114656 TCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 114710 || |||| ||| | | | ||| || || ||||||| ||||||||| ||||| Sbjct 12985 ---GCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCGTACTTCTCGTAGA 12929 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 | | ||||||||| || ||| | ||| |||| || || || | || || ||||| | Sbjct 12928 GAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACA 12869 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | ||| | ||| | || || || |||||||| || || |||| ||| ||||| Sbjct 12868 AACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGT 12809 Query 114831 AGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 114889 |||| | || ||| || | || || | | || || || ||| | ||||| || Sbjct 12808 AGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTACGTAGGTCCAAGAAC 12750 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 114946 || | || || || |||||||| |||| ||| | |||| || || ||||| | Sbjct 12749 TCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCT 12690 Query 114947 CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 || |||||| || |||| || ||| | ||||| || || |||||||| ||||| ||| Sbjct 12689 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCA 12630 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGC 115066 | || ||| || || || || || | ||| |||||| || | || || Sbjct 12629 TTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTG 12570 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 || ||||||||||| ||||| || ||||| ||| |||| | | ||| || ||||||| Sbjct 12569 ATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATG 12510 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGT 115186 || || || ||||| ||| | || | | |||||| |||| || || | || Sbjct 12509 CCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGA 12450 Query 115187 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 115245 || |||||||||||||| || || || || || |||| | || | || |||||| || Sbjct 12449 GTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTCTGCGACATCAACTC 12391 Query 115246 GTAGGTCTCCA 115256 ||| ||||||| Sbjct 12390 GTACGTCTCCA 12380 >seq14 Length=111874 Score = 138 bits (152), Expect = 1e-27 Identities = 391/586 (67%), Gaps = 26/586 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 22211 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22152 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 | || || |||||||| || | || | | ||| |||| | || || |||| Sbjct 22151 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTAC-AGCAGAC 22093 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 125935 | || | ||| |||| ||||||| |||| | |||||||| ||||| || | | Sbjct 22092 GGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCA 22033 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||| ||| | | ||| | | |||||| |||| || || |||||||| | Sbjct 22032 CA-GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCA 21974 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCA 126049 || | | | || || | ||| || |||| |||| | || ||| Sbjct 21973 TGCACACGGCTCTCCGGCAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCA-GGCG 21920 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| | ||||| |||||| ||| || || |||||||||| || || ||| Sbjct 21919 AAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGC 21860 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| || | || || || |||||||||||||| ||| Sbjct 21859 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCC 21800 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCAAACCA 126228 ||||| | |||||||| | |||||||| | | || || || || ||| |||| Sbjct 21799 TCCACCGAGGCGAACGCCAGCAGACGCTCCGGGTATGA-CGACACACGTGGGTCGCACCA 21741 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA--AA 126285 ||| | ||||| | || || ||| | ||||||| ||||| || || || || Sbjct 21740 CTTGAGTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAA 21681 Query 126286 GAGTTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 126330 | | ||||||| |||| || ||||||||| | || ||||| Sbjct 21680 GTGGTCCTTCT----CAATGGCGTCCTTGATGTACGTGTCAATGAG 21639 >seq196 Length=72114 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 ||||||||||| || |||||||| ||||| || ||||||||||| || || ||| Sbjct 57864 AGTTGCGCCACAGATGCATCGCGCACATTGAGGAGTTTACCACGGAGAGGAAAAACGCCG 57805 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || || ||||| ||||| || | ||||||||| || || || | ||| || |||||||| Sbjct 57804 TACTGGTCACGCCCAACAACTGCAAGACCAGCCACAGCCAGTGCCTTGGCTGAATCACCT 57745 Query 172883 TCCGTCACGATGAGCGTACA 172902 || |||| ||| |||| ||| Sbjct 57744 TCAGTCAAGATAAGCGAACA 57725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597308604340080