Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2038 122 9e-23 seq911 120 3e-22 >seq2038 Length=6223 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||| || || |||| || |||||||| || ||||| | Sbjct 801 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 742 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| |||||| || |||| | | | Sbjct 741 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 683 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| || ||||| || ||||| ||| Sbjct 682 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 623 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 622 AAGATCTGCAT 612 >seq911 Length=16908 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| ||| || || || | Sbjct 6200 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACC 6141 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | |||||||||||||| || | || ||||| Sbjct 6140 GTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTT 6081 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 6080 GTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 6022 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || ||||| || || ||||| || ||||| ||||| || Sbjct 6021 TCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATCTT 5982 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| ||| || || || | Sbjct 6428 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACC 6369 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | |||||||||||||| || | || ||||| Sbjct 6368 GTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTT 6309 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 6308 GTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 6250 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || ||||| ||||| Sbjct 6249 TCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6213 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| ||| || || || | Sbjct 6656 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACC 6597 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || | |||||||||||||| || | || ||||| Sbjct 6596 GTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTT 6537 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 6536 GTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 6478 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || ||||| ||||| Sbjct 6477 TCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543171882495840