Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_011055.1 Length=76312 Score E Sequences producing significant alignments: (Bits) Value seq874 149 3e-31 >seq874 Length=16017 Score = 149 bits (164), Expect = 3e-31 Identities = 393/597 (66%), Gaps = 20/597 (3%) Strand=Plus/Plus Query 65140 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65199 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 6492 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 6547 Query 65200 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 65252 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 6548 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 6607 Query 65253 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 65312 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 6608 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 6667 Query 65313 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65372 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 6668 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 6727 Query 65373 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65432 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 6728 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 6787 Query 65433 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 65492 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 6788 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 6847 Query 65493 GCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 65549 | || || | | |||| |||| ||| | | | | | |||||| | || Sbjct 6848 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 6904 Query 65550 CGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTT 65609 ||||| | |||| | | || || | |||| || | || |||| ||| || Sbjct 6905 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCGAGGTGACGTCCGGTGGCACGGCGTT 6961 Query 65610 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65669 | | | |||||| || || || |||| |||| |||| | || ||||| ||||| Sbjct 6962 GCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGGGCGA 7021 Query 65670 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65726 ||| ||||||||| || ||| ||||| | ||||||||||||||| |||| Sbjct 7022 CCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGCC 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244055674777178