Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq345 354 8e-93 >seq345 Length=31688 Score = 354 bits (392), Expect = 8e-93 Identities = 1104/1692 (65%), Gaps = 45/1692 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || |||||||| || || ||| || ||| |||| ||||| ||| || Sbjct 12421 GCCACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTG 12480 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||||||| || || | ||||| || ||| | |||||| | Sbjct 12481 CTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGC 12540 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || ||||| || || |||||| | ||| || | || |||| Sbjct 12541 ATCTCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGAGCCACTAACAGT 12600 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 12601 TACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAAC 12660 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| || |||||||||||||| || || | | || || || ||||| |||| Sbjct 12661 GACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTAC 12720 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| ||||| || ||||| | ||| | ||||| || ||||||||||||||| Sbjct 12721 TTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAAC 12780 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||| | ||||||||||| ||||| || || || || |||||| Sbjct 12781 GAGTTGCACCGTGCTCGTGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAA 12840 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| || || | |||||| | || |||||||||||| ||| || || | | Sbjct 12841 CGCGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTAC 12900 Query 94372 GACGTTTGTGGA-TCGCGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || ||| || | |||||| ||| | || | ||||| | |||| | Sbjct 12901 GAGTGCTGGGGAGACGAG-TTTGAA-ACTCTCTACGAGAAGTACGAGAAGGAGGGACGTG 12958 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| |||| |||||| ||| | |||| Sbjct 12959 CGCGCAAGACGATCAATGCACAGCAGCTGTGGTTCTCGATCTTGGACGCGCAGATTGAGA 13018 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 ||||| ||||| ||| ||| ||||||| | | |||| |||||||||||||||| | Sbjct 13019 CGGGTGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAATT 13078 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || |||| |||| || ||||| |||| | | ||||| || || |||| Sbjct 13079 TGGGCACGATC---CGCTCCAGTAACTTGTGCTGCGAGGTGATGGAGTACACGTCGCCGG 13135 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||| ||| ||| | ||| | | |||||| ||| | Sbjct 13136 ATGAGGTGGCGGTGTGCAACTTGGCGTCCGTAGCACTGCCTAAATTCGTG-GAG-GACGG 13193 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | | ||| | || | || ||| |||| |||| Sbjct 13194 AGTTTTCAACTAC--CAGAAGCTCT--ACGA-CGTG---ACT-------AAGG-TGGTGA 13237 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | || || |||| ||| ||||||| |||| ||||| ||| |||||| || | Sbjct 13238 CCCGTAATCTCAACAAGGTGATCGACATCAACTATTACCCAGTCGTGGAGGCTCGCAAGT 13297 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || |||||| | || ||||| | | Sbjct 13298 CCAACATGCGCCACCGCCCTGTGGGTATTGGTGTTCAGGGTCTGGCCGACGCTTTCATCC 13357 Query 94844 TGATGCGTCTGC-CCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGA 94901 | ||| || | | | ||| | | || ||| | |||| |||||| ||||| Sbjct 13358 TCATG-AACTACGCGTTCGAAAGCGAACAGGCTCGCGAG-CTGAACAAGAACATTTTCGA 13415 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || || | | | ||| | ||| | | | |||| ||| || || Sbjct 13416 GACCATCTACTATGCGTCAATGGAGACGTCCATGGAGATTGCCA---AGGAGCTGGGCCC 13472 Query 94962 ACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG 95019 |||| |||||| || ||||| || | | |||| || || ||||||||| | ||| Sbjct 13473 TTACGAGACGTTCCAGGGCTCGCCTGCTAGTA--AGGGTATCTTCCAGTTCGACATGTGG 13530 Query 95020 GGTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA 95076 || || || ||| || |||| |||||| || || | | ||||||||| Sbjct 13531 GGCGTCTCCCCGTCGTCCGGCCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTTATCAAA 13590 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||| | ||| |||| || |||||||||||||| ||||| || || ||||||||| Sbjct 13591 CACGGTATCCGTAACTCGCTACTGGTGGCCCCCATGCCTACGGCTTCGACTGCGCAGATC 13650 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| |||| |||| ||| || ||| |||||||| | || ||||| Sbjct 13651 CTGGGCAACAATGAGTCCATCGAGCCCTACACATCGAACATGTACAACCGCCGTGTGCTT 13710 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || | |||||| |||| | ||| |||| ||||| | Sbjct 13711 GCTGGTGAGTTCACGATCGTGAACAAGTACCTAATGAAGGAGCTGATCGAGCTGGGCATC 13770 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | |||| ||||| | || || | || || || ||||| || | Sbjct 13771 TGGACGCCCGAGGTTCGCAACCAGATCCTGAACGACGGTGGGTCTGTGCAGAAGGTCAAG 13830 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| || | |||| |||||||| |||||||||||| |||| | Sbjct 13831 GTCATCCCGGACAACGTAAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCG 13890 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || || | | |||| ||| || | | |||||||||||| Sbjct 13891 GTGCTGGATCTGTCAGCCGACCGTGGCGCTTACATCTGCCAGAGTCAGTCGCTCAACATC 13950 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | || |||||| ||||||| |||| ||| Sbjct 13951 CATATTGCCGACCCGACGATCAGCAAGCTCACATCCATGCACTTCTACGCTTGGAAGAAG 14010 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || |||||||| || ||||| || |||| | || || || ||| | || || ||| Sbjct 14011 GGACTCAAGACGGGCATGTACTACATGCGCGGGCGCCCGAAAGCCGACGCTATCCAATTC 14070 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 14071 ACCGTGGACAAG 14082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494685934974960