Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1082 102 6e-17 seq964 86.0 5e-12 >seq1082 Length=13368 Score = 102 bits (112), Expect = 6e-17 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | ||| | ||||| || | || || | ||| | ||| | |||||| Sbjct 2394 CGTGGCCGGCCTGGGTATCACGGCGGGTGCGCACCGCCTATGGGCGCACCGCGGCTACAA 2335 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || ||| Sbjct 2334 GGCCAAGCTACCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCTTTCGAGGGCAC 2275 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| ||||| || ||| ||| | || ||||||||| ||| ||| |||||||||| Sbjct 2274 CATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACTCGACGGCCGA 2215 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 2214 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAA 2155 Query 108576 GGACCCCGACGTGATCTCGGCCGG 108599 | || ||||| | ||||||| Sbjct 2154 GCACAAGAACGTGCGCGCGGCCGG 2131 >seq964 Length=14676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 108440 TGGCAGGACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACT 108499 |||| | ||| ||||||| || ||| | ||||||| | || ||||||||||| | Sbjct 13569 TGGCCAGCCAGGGCACCATCTTCCACTGGAGCCGCGATCACCGCGTGCACCACAAGTATT 13510 Query 108500 CTGACACGACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGAT 108559 | ||||||| |||||||| |||||| | | | || |||| ||| ||||| |||| | Sbjct 13509 CGGACACGAGCGCCGACCCGCACAACTCTGGCCGCGGCTTCTTCTTCGCGCACATGGGCT 13450 Query 108560 GGCTCATGATGACCAAGGACCCCGACGTGATCTCGGCCGG 108599 || | || | | ||||||||| | ||| || |||||| Sbjct 13449 GGTTGCTGGTCAAGAAGGACCCCAAGGTGGTCAAGGCCGG 13410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381744761889744