Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq911 120 3e-22 seq2038 105 7e-18 seq290 96.9 3e-15 >seq14 Length=111874 Score = 127 bits (140), Expect = 2e-24 Identities = 494/762 (65%), Gaps = 37/762 (5%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || ||||||| ||| | || || ||||| ||| ||| ||||||| | Sbjct 21469 ACGAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTTCGCGGCCAGTGATGGCATCGTAA 21528 Query 52153 ACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || ||||| ||| | | || ||| || | || | || | |||||| | | || Sbjct 21529 ACGAGAACCTGGCCATGAACTTCA-GCAACGAA--GTGCAGGTGCCCGAGGCTCGCTGCT 21585 Query 52210 TTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 | || || || | ||| ||||||| | | ||| ||||| | ||| ||||||||| Sbjct 21586 TCTACGGCTTCCAGATTGC-CATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATT 21644 Query 52269 GAGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTG 52328 || | || || || | ||| ||| ||||| ||| | ||| | | Sbjct 21645 GACACGTACATCAAGGACGCCATTGAGAAGGACCACTTGCTGCGTGCCATTGAGACCATC 21704 Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC----CGC 52384 |||||||| || || || | |||||| | |||||| ||| | || || Sbjct 21705 CCGTGCGTGACGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGAC--CCACGTGTGTCGT 21762 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | | ||||| || |||| |||||| || |||||| | || || || ||| Sbjct 21763 CATACCCG--GAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTC 21820 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| | ||||||| | | || | | ||| | ||||| || || | ||| || Sbjct 21821 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAA 21880 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAA 52561 |||| |||| || || || || ||||||||||||| || |||||| |||| ||| Sbjct 21881 CGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACTCCAA 21940 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGT--TCAAG---GA 52615 | | || | | ||| || |||| || || || ||||| || | || Sbjct 21941 GCTG---GTCAAC---AAACTGC---CGGA---GAGCCGTGTGCATGAGATCGTGCGTGA 21988 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||||||| || || | |||||| | | | |||| || || |||||| | ||||| Sbjct 21989 CGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTCGCTCCCTGTGGAGCTGATCGGCAT 22048 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||| || ||||||| ||||||||||||| ||||| || |||||| || || Sbjct 22049 GAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCACT 22108 Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 || | | ||| || | ||| || ||||| || | ||| ||| || || || Sbjct 22109 GGGTGTGTCCAAGATCTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCTCT 22168 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||||| || |||||||| Sbjct 22169 CCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 22210 >seq911 Length=16908 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || ||||||||||| || Sbjct 6440 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6381 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6380 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6321 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6320 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6261 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 6260 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6212 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || ||||||||||| || Sbjct 6212 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6153 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6152 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6093 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6092 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6033 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||||||| || || || |||||||| Sbjct 6032 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 5985 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||| ||| Sbjct 6667 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6608 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6607 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6548 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6547 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 6488 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 6487 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6440 >seq2038 Length=6223 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || || || ||||||||| || || |||| ||| Sbjct 801 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 742 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 741 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 683 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 682 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 623 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 622 AAGATCTGCATG 611 >seq290 Length=35206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | ||| | | |||||||| || ||||||||||||||| Sbjct 15351 CCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 15292 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 15291 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 15232 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 15231 ATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15172 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || || || ||||||||| Sbjct 15171 TCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 15124 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || |||||||||||||| Sbjct 15124 GCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 15065 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 15064 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 15005 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 15004 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 14945 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || || || ||||||||| Sbjct 14944 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 14896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || |||||||||||||| Sbjct 14896 GCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 14837 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 14836 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 14777 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 14776 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 14717 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 14716 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 14669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225019034720