Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq911 150 2e-31 seq14 102 8e-17 seq345 98.7 9e-16 seq2038 93.3 4e-14 >seq911 Length=16908 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 6668 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6609 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6608 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6549 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| | Sbjct 6548 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCA 6490 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| |||||||||||||| || || || ||||||||| Sbjct 6489 CGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6440 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | | Sbjct 6439 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6380 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6379 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6320 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| || Sbjct 6319 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 6261 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| |||||||||||||| || || || ||||||||| Sbjct 6260 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6212 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | | Sbjct 6211 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6152 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6151 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6092 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| || Sbjct 6091 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 6033 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||||||| || || || |||||||| Sbjct 6032 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 5985 >seq14 Length=111874 Score = 102 bits (112), Expect = 8e-17 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | ||| | |||||||||| || || || ||||| ||||| || Sbjct 22044 GGCATGAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTA 22102 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| || ||| ||||| |||||| | |||| || ||||| | ||| ||| | Sbjct 22103 CTCACTGGGTGTGTCC-AAGATCTACCACGTCAAGAACCCGTTCGACTGGATGGACATGA 22161 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || ||| |||||||||||||||||||||||||||| || ||||| || Sbjct 22162 TCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 22210 >seq345 Length=31688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 295/454 (65%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||| |||||||| |||| ||| | ||| ||||| ||| || Sbjct 14040 GCGCATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATG---GA 13984 Query 145818 CATGACCGAGTA---CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 ||| | | ||| || ||||| | | | || || || || ||||| || Sbjct 13983 TGTGAGCTTGCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCAGAT 13924 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGT 145934 | ||| | |||||||| | || || | || |||| || || ||||| | || Sbjct 13923 GTAAGCGCCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGT 13864 Query 145935 TTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||| |||| | || || | | | ||||||||||||||| || Sbjct 13863 CTTGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTC 13804 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | || || | |||||| | || || || | ||| || || | || |||| || Sbjct 13803 GTTCAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCAT 13744 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| ||| || | | ||||| || || || || || | |||| ||| Sbjct 13743 TAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGA 13684 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| | ||||||| ||||| ||||| || || |||||||| |||| ||| |||||||| Sbjct 13683 TGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCAT 13624 Query 146175 GTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 | |||||||| | ||||| | | |||||| Sbjct 13623 GGGGGCCACCAGTAGCGAGTTACGGATACCGTGT 13590 >seq2038 Length=6223 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || ||||| || || ||||| || || ||| ||||| Sbjct 799 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 740 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 739 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 680 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || || || ||||| || || ||||| Sbjct 679 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 620 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 619 ATCTGCATG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475464982902240