Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq290 116 3e-21 seq345 113 4e-20 >seq290 Length=35206 Score = 116 bits (128), Expect = 3e-21 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| || | || ||| ||||||||||| || ||||| ||||| || || |||| Sbjct 15353 TTCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 15294 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || |||| || || || ||| | |||| ||||||||||| |||| Sbjct 15293 TCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCG 15234 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | |||||||| ||||||||||| || || || | || | || | | ||| || | ||| Sbjct 15233 GGATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 15175 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || || | ||| ||||| || | || || || || || ||||| ||| || Sbjct 15174 ACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGCCGCCAC 15117 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || |||||||| || ||||| ||||| || || ||| Sbjct 14898 ATGCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 14839 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || |||| || || || ||| | |||| ||||||||||| ||| Sbjct 14838 CTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGC 14779 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||||||||| || || || | || | || | | ||| || | ||| Sbjct 14778 GGGATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTC 14720 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| ||||| || | || || || || || |||||| Sbjct 14719 CACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATC 14668 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || |||||||| || ||||| ||||| || || ||| Sbjct 15126 ATGCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 15067 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || |||| || || || ||| | |||| ||||||||||| ||| Sbjct 15066 CTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGC 15007 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||||||||| || || || | || | || | | ||| || | ||| Sbjct 15006 GGGATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTC 14948 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || || | ||| ||||| || | || || || || || ||||| ||| || Sbjct 14947 CACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGCCGCCAC 14889 >seq345 Length=31688 Score = 113 bits (124), Expect = 4e-20 Identities = 372/567 (66%), Gaps = 15/567 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || |||| ||| || || || ||| | |||||||| ||| | ||| | ||| || Sbjct 12304 AAAGTCGTCGAGCGGCCGCAGCAAATGATTATGCGCGTGGCTCTGGGCATCCACAAGAGC 12363 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| | || || || ||||| |||||||| || || || |||||||| || Sbjct 12364 AACATCCAGGCAGCTCTGGAGACGTACGAGTTGATGTCGCAGAAGTTCTTCACGCATGCC 12423 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | |||||| | ||| ||| ||||| | |||||| |||| ||||| || ||||| Sbjct 12424 ACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTG 12483 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || ||| || ||| ||| || ||||| || ||| || | || |||| || Sbjct 12484 GCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATC 12543 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCG 123196 ||||||| | || || || ||| | | ||||| || | ||| || | | || Sbjct 12544 TCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGAG-CCACTAACAGTTA 12602 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGC-TCGAATCC--ATGCTGCGAGTTTACAA 123253 |||| || |||| |||| ||| | ||| || |||| |||||||| || | || Sbjct 12603 CATCCGAGGCACGAACGGC-TCGTCCAATGGCATC--ATCCCAATGCTGCGGGTGTTTAA 12659 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGGC---GGCAAACGCAAAGGCGCGATGGCGATCTA 123310 || | | ||| |||| ||||||||| |||||||| ||||| || | || ||||| Sbjct 12660 CGACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTA 12719 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA-AAACGCAACATGGGGG 123369 | || |||||||| | ||| || | ||| || || | || | | | || || Sbjct 12720 CTTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAA 12779 Query 123370 CG-GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATG 123428 || | | | | || || || ||||| |||||| | ||||| || ||| |||| ||| Sbjct 12780 CGAGTTGCACCG--TGCTCGTGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATG 12837 Query 123429 CGACGCGTAAAAGACGACGGCGTGTGG 123455 |||||| ||| | | ||| |||| Sbjct 12838 AAACGCGTGGAAGCCAATGGCAAGTGG 12864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969152858960