Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq345 217 2e-51 seq14 140 4e-28 seq196 95.1 1e-14 seq6 93.3 5e-14 >seq345 Length=31688 Score = 217 bits (240), Expect = 2e-51 Identities = 1077/1689 (64%), Gaps = 68/1689 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| ||||||||||| |||| |||||| || || | ||||| || | | ||| Sbjct 14034 GTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT 13975 Query 115623 GGAGAGTGTTGG------ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-A 115675 | || || || | | | ||| ||| | ||| ||| | |||| | Sbjct 13974 GCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCA------GATGTA 13921 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 |||| || || || || | || ||| | ||| |||| |||||| |||||||| || Sbjct 13920 AGCG-CCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCT 13862 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||| || ||| | | || ||||| || || || || | ||| ||||| | | Sbjct 13861 TGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGT 13802 Query 115796 TGACCATGAGATCCTTCATATCCTTTGAC---CAGAGACCAATCTTCTTGAGATCCTCCA 115852 | || || | || | ||| | | |||| || | || | || |||| || Sbjct 13801 T---CAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCA 13745 Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGG 115912 |||| ||| || || | |||||||| || || || | || ||||| | Sbjct 13744 TTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCG 13685 Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972 ||||| ||||| | | |||||||||| |||| ||| || || || || || || |||| Sbjct 13684 ATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCA 13625 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032 |||| |||| || || ||| |||| ||| ||| | ||||| || || Sbjct 13624 TGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAG 13565 Query 116033 CCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 |||||| | | | | | | ||||||| || ||||||| |||||| | Sbjct 13564 CCCAGTTCCACAGGCCGGACGACGGGGAGACGCCCCACATGTCGAACTGGAAGATACCCT 13505 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGG 116146 || ||||| |||| || ||||| || |||||| | |||| | |||| || Sbjct 13504 TACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC---AGCTCCTTGGCAATCTCCA 13448 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 | || ||| | | || | || || ||||| |||||| |||| | | Sbjct 13447 TGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCGAG 13388 Query 116207 CCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACA 116265 ||| ||| || |||||| | || | || || | || || ||||| || ||| Sbjct 13387 CCTGTTCGCTTTCGAACGCGT-AGTTCATGAGGATGAAAGCGTCGGCCAGACCCTGAACA 13329 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAA 116322 || | || | ||||| || | ||| || ||||| ||||| ||||||| || ||| Sbjct 13328 CCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC---CTCCACGACTGGGTAA 13272 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || | ||||| ||| | || ||||| ||| || ||||| || | || | ||| Sbjct 13271 TAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAGTCACGTCGTAGAGC 13212 Query 116383 TTTTCGTAATC-AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 || | ||| | |||||| || || | || | ||||| || || | ||||| Sbjct 13211 TTCTGGTAGTTGAAAACTCCG-------TCCTCCACGAATTTAGGCAGTGCTACGGACGC 13159 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || || ||||| | ||||||| |||||||| || | || ||||| || Sbjct 13158 CAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCACAAGTT 13099 Query 116502 --TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || | || |||||||| |||| || || ||||| ||| ||| |||||| Sbjct 13098 ACTGGAGCGG--ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTG 13041 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 || ||||| | ||| |||||||| | || | | | || | ||| | Sbjct 13040 TACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACA----- 12986 Query 116620 GCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 || |||| ||| | | | ||| || || ||||||| ||||||||| |||||| | Sbjct 12985 GCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCGTACTTCTCGTAGAGAG 12926 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 |||||||| || ||| |||| ||| |||| || || || | || |||||||| | | Sbjct 12925 TTTCAAACTCGTCTCCC-CAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAA 12867 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 ||| | ||| | || || || |||||||| || || |||| ||| || || || Sbjct 12866 CTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAG 12807 Query 116794 AAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || | || ||| || | || || | | || || || ||| | ||||| || || Sbjct 12806 AACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTC 12748 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACC 116909 | || || || |||||||| |||| ||| | |||| || || || || | || Sbjct 12747 GAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCC 12688 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 |||||| || |||| ||||| ||||||| || || |||||||| ||||| |||| Sbjct 12687 GCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATT 12628 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || ||| || || || || || | || |||||| || | ||| || || Sbjct 12627 GGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT 12568 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||||||||||| ||||| || ||||| || |||| | | ||| || ||||||| || Sbjct 12567 GCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCC 12508 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 || || ||||| ||| | || | | |||||| |||| || || | || || Sbjct 12507 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGT 12448 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGT 117208 |||||||||||||| || || || || || |||| | || | || |||||| |||| Sbjct 12447 GCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTCTGCGACATCAACTCGT 12389 Query 117209 AGGTCTCCA 117217 | ||||||| Sbjct 12388 ACGTCTCCA 12380 >seq14 Length=111874 Score = 140 bits (154), Expect = 4e-28 Identities = 304/448 (68%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | ||||| Sbjct 22211 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22152 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 127349 | || || |||||||| || | || | | ||| |||| | || || |||| Sbjct 22151 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTAC-AGCAGAC 22093 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||| ||||||| |||| | |||||||| ||||| || | | Sbjct 22092 GGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCA 22033 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||| ||| | | ||| | | |||||| |||| || || || ||||| | Sbjct 22032 CA-GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCA 21974 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 || | | | | || || | ||| | |||| |||| | || | | Sbjct 21973 TGCACACGGCTCTCCGGCAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCAGGCGA 21919 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | ||||| |||||| ||| || || |||||||||| ||||| |||| Sbjct 21918 AGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCA 21859 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 21858 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCT 21799 Query 127644 CCACACACGCGAACGCAAATAGACGCTC 127671 |||| | |||||||| | |||||||| Sbjct 21798 CCACCGAGGCGAACGCCAGCAGACGCTC 21771 >seq196 Length=72114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 ||||||||||| || || ||||| ||||| || || |||||||| || || ||| Sbjct 57864 AGTTGCGCCACAGATGCATCGCGCACATTGAGGAGTTTACCACGGAGAGGAAAAACGCCG 57805 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || || ||||| ||||| || | |||||||| || || || | ||| || |||||||| Sbjct 57804 TACTGGTCACGCCCAACAACTGCAAGACCAGCCACAGCCAGTGCCTTGGCTGAATCACCT 57745 Query 176903 TCCGTCACGATGAGCGTACA 176922 || |||| ||| |||| ||| Sbjct 57744 TCAGTCAAGATAAGCGAACA 57725 >seq6 Length=134926 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/417 (66%), Gaps = 13/417 (3%) Strand=Plus/Plus Query 12652 CCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGC 12711 ||| ||||| || ||| ||| ||| |||||| ||| || | | || ||||| | Sbjct 35263 CCAGAATCTCCTTGCGGCCGGCCACGTCGGGTAGATCCACCGTCACGTGGCGGTCAAATC 35322 Query 12712 GACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAA 12771 |||| || |||| | || | || || | || | ||| || ||| ||||||||| Sbjct 35323 GACCCGGTCGGATCAACGCATTATCCAGCACGTCGGGGAAGTTGGTGGCCCCGATGACAA 35382 Query 12772 CGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTT 12831 ||||||| | | | |||||| || |||||||| | ||||| |||| || Sbjct 35383 TGATGCCCTTGTTCTGATCGAAACCGTCCATCTCCACGAGCAGTTGGTTGAGCGT----- 35437 Query 12832 CACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTT 12891 || ||||| || | | || || |||| | ||||| ||||| || | Sbjct 35438 CATCTTCATGGCCTGCTG---TTCCTTGAGCT-TGCGCGTCCCACCGATAGCGTCGATCT 35493 Query 12892 CGTCAATGAAAACGATACACGGTTGATTTTCAC--GGGCAACTTCAAAGATATCTCGCAC 12949 |||||||||| | ||| ||||| || || | | || | || ||||| | || ||||| Sbjct 35494 CGTCAATGAAGATGATGCACGG-TGCCTTCCGCTTGGCCGAC-TCAAACAGGTCGCGCAC 35551 Query 12950 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAA 13009 || || || || ||||| |||||||| |||| | || |||| | | || ||| Sbjct 35552 TCGACGCGCGCCCACGCCCACGTACATCTCCTCAAACTCGGATCCGGACGAATAGAAGAA 35611 Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || ||| || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 35612 CGGCACGCCGGCCTCACCAGCGATTGCGCGGGCCAGCAGCGTCTTGCCCGTGCCCGG 35668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460987570160