Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14 149 1e-30 seq345 136 6e-27 >seq14 Length=111874 Score = 149 bits (164), Expect = 1e-30 Identities = 417/636 (66%), Gaps = 33/636 (5%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| |||||||||||||||||||||||||| | || || ||||| | |||| Sbjct 22202 CACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAA 22143 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||||| ||| ||| | | || || | ||||| | ||| ||||| Sbjct 22142 CGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGGTCAGCCAC 22083 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| ||||| | | |||| || || | |||| || ||||||| Sbjct 22082 GAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGA 22023 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || ||| |||||| | ||||||| | ||||| || ||| |||| ||||| Sbjct 22022 GTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATGCACACG--- 21966 Query 159883 GTACCCCGGC------TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCA 159936 | | ||||| ||| ||| || || ||| |||||| || ||||| Sbjct 21965 GCTCTCCGGCAGTTTGTTGACCAGCTTGGAGT------ACATGAGGCAGGCGAAGTCCGT 21912 Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996 ||||| ||||| || || ||| | |||||| || | | |||| || ||||||| || Sbjct 21911 GTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCC 21852 Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGG 160055 ||| |||||||| || |||| ||| ||| | | | | || ||||| |||||||| | Sbjct 21851 GCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCG 21793 Query 160056 CCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCA----TGGGTC-CACCT 160110 || ||||||| || | ||| || || | || |||||| |||| Sbjct 21792 AGGCGAACGCCAGCAGACGCTC--------CGGGTATGACGACACACGTGGGTCGCACCA 21741 Query 160111 TTTG---GCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAA 160167 ||| ||||| | || ||||| | | |||||| ||| ||| | ||| | ||| Sbjct 21740 CTTGAGTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAA 21681 Query 160168 TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGC 160227 ||||| ||| | | |||||||| || |||| ||| |||||| | || | Sbjct 21680 GTGGTCCTTCTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGA 21621 Query 160228 GTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA 160263 ||| | || |||||||| ||||| ||| |||||| Sbjct 21620 GTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAA 21585 >seq345 Length=31688 Score = 136 bits (150), Expect = 6e-27 Identities = 409/619 (66%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| ||||| || || |||| |||| || | | | || |||||||| Sbjct 14082 CTTGTCCACGGTGAATTGGATAGCGT---CGGCTTTCGGGCGCCCGCGCATGTAGTACAT 14026 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | Sbjct 14025 GCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTTGCTGATCGT 13966 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| || || ||||| || ||||| || ||| |||| ||| |||| || || | Sbjct 13965 CGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCAGATGTAAG-CGCCACGGTCGG 13907 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT-CTCTG 204073 | | || || | | | ||||||| |||||||||||||||||| || || || | Sbjct 13906 CTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTTA 13847 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CA 204131 ||| || | ||| || | ||| | || || |||| || | ||| Sbjct 13846 CGTTGTCCGGGATGACCTT--GACCTTCTGCACAGACCCACCGTCGTTCAGGA-TCTGGT 13790 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | ||| | ||| ||||||| | |||||||||| || |||| ||| | Sbjct 13789 TGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCA 13730 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | ||||| | ||| || ||| ||| ||| | || |||| Sbjct 13729 CGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGA 13670 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||| |||||||| | ||||| || || ||||| |||||||| |||| || | Sbjct 13669 TGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTA 13610 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--T 204369 | ||||| || | ||||| ||| || | |||||| | | ||||| || Sbjct 13609 GCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGGC 13550 Query 204370 CGCAC-TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || || || |||||||||||||||||||| ||||| || | ||| | || || Sbjct 13549 CGGACGACGGGGAGACGCCCCACATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGC 13490 Query 204429 CCTTGTACGTCGGATAAGG 204447 ||| | ||||| ||||| Sbjct 13489 CCTGGAACGTCTCGTAAGG 13471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095304934560