Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 257 2e-63 seq290 129 6e-25 seq911 123 2e-23 seq2038 122 9e-23 seq398 100 3e-16 >seq14 Length=111874 Score = 257 bits (284), Expect = 2e-63 Identities = 534/785 (68%), Gaps = 24/785 (3%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||| ||||||||||||||||| || ||||| | | || | || | | Sbjct 22099 AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATC 22040 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || ||| || |||| || | ||| ||||| || | |||||||| ||| Sbjct 22039 AGCTCCACAGGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACG 21980 Query 132841 ATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGC---ACCAAATGCTTGAA---CATCAA 132893 || || | || | | || ||| ||| ||| |||| ||||| | ||| | Sbjct 21979 ATCTC----ATGCACACGGCTCTCCGGCAGTTTGTTGACCA---GCTTGGAGTACATGAG 21927 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| |||||| || | | || || ||||| ||| | | Sbjct 21926 GCAGGCGAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAG 21867 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||||||||| || |||||||| || |||| | ||| |||||| ||||| Sbjct 21866 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAA 21807 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG- 133072 || |||||| || | ||||| |||| ||| ||||| | | || | | ||| Sbjct 21806 GATGCCCTCCACCGAGGCGAACGCCAGCAGACGCTCCGGGTA--TGACGACACACGTGGG 21749 Query 133073 -CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGG 133129 || ||| || ||||| | ||| |||||| | |||||||| || || || |||| Sbjct 21748 TCGCACCACTTGAGTGCCCAGTTGGC--TTTCTTCGTCACGCACGGGATGGTCTCAATGG 21691 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 | || ||| || ||||| | | | ||| ||||| ||||| ||| | Sbjct 21690 CACGCAGCAAGTGGTCCTTCTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGT 21631 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | |||||||| | |||||| ||||| || || |||||||| ||||| || |||||| Sbjct 21630 AGACCTCCGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGG 21571 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 |||||||||||| | ||| | | |||| || ||||| |||||||| || |||| Sbjct 21570 GCACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTTACGATGCCATCACTGG 21511 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCC 133369 | ||||||||||| ||||| ||||||| ||| || ||||||||||| | | | ||| Sbjct 21510 CCGCGAAAAAGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGGTTCGCCC 21451 Query 133370 AGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||| | | | | || | |||||||| ||||||| | ||||||||||| |||||||| Sbjct 21450 AGTC-CTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAAAACGAAGCCTCGGCC 21392 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 || |||||||| ||||| ||| | || ||||| || | ||| || ||| ||| Sbjct 21391 TTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGGTTCGGG 21332 Query 133489 TTTTC 133493 || || Sbjct 21331 TTCTC 21327 >seq290 Length=35206 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | | Sbjct 15125 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 15184 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | || || || || || |||||| |||| Sbjct 15185 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTGACC 15242 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 15243 AGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACA 15302 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 15303 ACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 15351 Score = 127 bits (140), Expect = 2e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | Sbjct 14666 AAGATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCG 14725 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | || || | || || || || || |||||| | Sbjct 14726 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTG 14783 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| || || || || | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 14784 ACCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACT 14843 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 14844 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 14896 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | | Sbjct 14897 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 14956 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | || || || || || |||||| |||| Sbjct 14957 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTGACC 15014 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 15015 AGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACA 15074 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 15075 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 15124 >seq911 Length=16908 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | Sbjct 5982 AAGATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 6041 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | ||||||| ||||| || || || || |||| Sbjct 6042 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGA 6100 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| ||||| |||||||| |||| || || | | ||||| Sbjct 6101 CCAGCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTA 6160 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 6161 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6212 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | | Sbjct 6213 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6272 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| || || || || ||||||| Sbjct 6273 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6331 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6332 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6391 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 6392 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6440 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | | Sbjct 6441 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6500 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| || || || || ||||||| Sbjct 6501 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6559 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6560 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6619 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 6620 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6667 >seq2038 Length=6223 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| || |||||||| | ||||| ||| | || Sbjct 612 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 671 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| |||||||| |||||| ||||| Sbjct 672 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAAT-CCCGCCTGACCA 730 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 731 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAA 790 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 791 CATCCAGAAGG 801 >seq398 Length=29186 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 14314 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 14255 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||| ||||| ||||||||||| || | Sbjct 14254 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 14195 Query 38466 GGCGG 38470 || || Sbjct 14194 GGTGG 14190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135124483840