Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq345 159 4e-34 seq14 116 5e-21 seq212 87.8 2e-12 seq97 86.0 8e-12 seq1596 84.2 3e-11 >seq345 Length=31688 Score = 159 bits (176), Expect = 4e-34 Identities = 383/569 (67%), Gaps = 9/569 (2%) Strand=Plus/Plus Query 111673 TGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| |||||| | | || | |||| || || || || || |||||| Sbjct 12380 TGGAGACGTACGAGTTGATGTCGCAGAAGT-TCTTCACGCATGCCACTCCCACGCTCTTC 12438 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||| || || | || || ||||| || ||| | | || | |||| || Sbjct 12439 AACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGAC 12498 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | ||||| |||| |||||| | | ||||| ||||| || |||||||| Sbjct 12499 TCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGGG 12558 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 ||||| || || || || | || |||||| || | || |||| || || Sbjct 12559 GGTATTGGCATCAGTATGCACAACATCCGAGCCACTAACAGTTACATCCGAGGCACGAAC 12618 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || |||| || || |||||||| || || ||||||| ||| || || || || Sbjct 12619 GGCTCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTG 12678 Query 111972 AACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | | ||| || || ||||| |||| |||| | ||||| ||||| || Sbjct 12679 GACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGCT 12738 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CG 112087 || || | |||||| | || | ||| ||||| || | || | || | |||| || Sbjct 12739 GACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAACGA-GTTGCACCGTGCTCG 12797 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 || | |||| |||||| ||| | || ||||| |||||||| | || || | | ||| Sbjct 12798 TGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGAAGCCAATGG 12857 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGG 112206 ||| ||| | | || ||||| | | || || || |||| ||| ||| | ||| || | Sbjct 12858 CAAGTGGAGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTACGAGTGCTG-GGGAGACG 12916 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAG 112235 |||||||| | |||||| ||||||||| Sbjct 12917 AGTTTGAAACTCTCTACGAGAAGTACGAG 12945 >seq14 Length=111874 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || | || ||||| ||||||||||| || ||||||||| | Sbjct 21771 GAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 21830 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| || |||||||| |||||| ||||||| |||||||| ||| Sbjct 21831 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTGATC 21890 Query 102300 TCTCGTGACGAGGG 102313 ||||| ||||| Sbjct 21891 AGCCGTGATGAGGG 21904 >seq212 Length=40772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 250/379 (66%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 176701 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 176760 |||||| |||| ||| || | |||| | | |||||| |||||| || |||| ||| Sbjct 31051 TGGCCAAAAGTGGTGGATGAGGTTGATCACCAAACCCTTAATGTGGCTGCCATCGTGATC 31110 Query 176761 GGCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCGGAAACATCTTGATAGT 176816 ||| | ||||||||| | | |||||||| |||| ||| || | || | Sbjct 31111 CTGATCTGCCATGATCATCAAGTGGCCATACCGCAAGCCCTTCGTTGAC----TCGTACT 31166 Query 176817 CCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGATG 176873 || || | | ||||| | |||||| || |||| ||| ||||| ||| Sbjct 31167 TCTGGCCGTACTTGAGACCGAGGATCTT---GACCACGTTTTGAATCTCTTCGTTCTTCA 31223 Query 176874 TGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACAC 176933 || |||||| | || || ||||| ||| ||| || || || |||||||||| Sbjct 31224 GGATTTGTGTGTGACTTGCTTCGCGAACGTTCAGCATCTTACCTCGCAGTGGGAAGACAC 31283 Query 176934 CGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCAC 176993 | |||| ||| | ||||| || | ||| || | || || | ||||| || ||||| | Sbjct 31284 CATAGTAATCTCTGCCAACGACGGCGAGGCCACCCACAGCAACAGTTTTGGCGGAATCTC 31343 Query 176994 CCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCAT 177053 | || || | ||| || || || | | || |||||||| || | ||| ||||| | Sbjct 31344 CTTCCGTTAGGATCAGAGTGCAATCCTTACTTTTCGCCGTACCAGCGTGGTTGGCATCGT 31403 Query 177054 CCAATTTGGGAATACCAGT 177072 ||| |||||| ||||| || Sbjct 31404 CCAGTTTGGGGATACCCGT 31422 >seq97 Length=59640 Score = 86.0 bits (94), Expect = 8e-12 Identities = 270/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || || ||||| || || || | || | ||||| |||||| | || ||||| | || Sbjct 41015 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40956 Query 15948 ATGACAACAATACCTGTT-TCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | || || | |||| ||| | ||| ||||||||||| || || ||||||| Sbjct 40955 AGCACCACCACACCTTCACTCGAGTTGAAA-CCATCCATCTCGACCAGCAGTTGGTTAAG 40897 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-CCA 16062 || | ||| || || || || || | | | | || || || | ||| | ||| Sbjct 40896 CGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGTGCACGCGCCA 40838 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | |||||||| ||||||||||| || |||||||| || | || || | | || | Sbjct 40837 CAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGAACA 40778 Query 16123 GATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || ||||| || || |||||||| || |||||||| | || | | | || Sbjct 40777 GGTCACGCACACG--TGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCAGA 40720 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 | || ||| || || ||| |||||| ||| |||| || || || |||||||| Sbjct 40719 AATGCTGAAGAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTACC 40660 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||||| ||| || | || || ||||| || |||||||| ||| Sbjct 40659 CGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCA 40611 >seq1596 Length=8541 Score = 84.2 bits (92), Expect = 3e-11 Identities = 292/452 (65%), Gaps = 13/452 (3%) Strand=Plus/Minus Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCT 15989 |||||||| ||||| || || | || || | | ||| ||||| ||||||||||| Sbjct 1387 CGATTCGTAGCGGCAATCACGATAACTCCGTTGGCATTACCTTCAAACCCATCCATCTCC 1328 Query 15990 GTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG 16049 |||| | |||||| | || ||||| |||||||| |||| | ||||||| Sbjct 1327 GTCAGCAACTGGTTCAGTGTCTGTTCACGTTCATCGTTCGAGTTGAAACCACCA------ 1274 Query 16050 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 16109 ||| ||| ||| ||||| ||||| ||||| || | |||||| || | | | |||| Sbjct 1273 CGTGCCTTAGCCAACGCATCGATCTCGTCAATAAAAATGATGCACTGTGGGTACT-GCGA 1215 Query 16110 GCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 16167 | | || | ||||| || || || || ||||| || || | ||||||||||| Sbjct 1214 G-GCCTGCGTGAAGAGGTCTCGCACTCGAGCAGCGCCTCTCCCCACCAGCATCTCCACAA 1156 Query 16168 AGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 ||| | ||| || || | ||| | ||| | || || | ||||| || | Sbjct 1155 AGTCCGAGGCTGAGCAAAACAAGAAAGCCACACCCGCCTCCGAAGCCACAGCTCGAGCCA 1096 Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 16287 || || |||||||| |||| | || ||| || |||| || | ||| || | Sbjct 1095 ACAGCGTTTTACCCGTTCCTGACGGGCCACAGAGCAGCACACCCTTGGGGACCTTAGCTC 1036 Query 16288 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTT 16347 || | | |||||| | || ||| | | || ||||| | ||| |||| ||| | Sbjct 1035 CAATAGCCTGGTATCTTGCTGGATGCCTCAAGAAGTCCACGACCTCCTCCAGTTCCTTCC 976 Query 16348 TGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 | || ||||||| || | || ||| |||| Sbjct 975 TAGCCACGTCAATTCCTGCCACGTCGTCAAAC 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620695642578720