Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq345 196 6e-45 seq97 145 9e-30 seq212 123 3e-23 seq14 102 1e-16 >seq345 Length=31688 Score = 196 bits (216), Expect = 6e-45 Identities = 1085/1705 (64%), Gaps = 56/1705 (3%) Strand=Plus/Minus Query 109378 AATTGGATTG-GTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACC 109436 |||||||| | |||| ||||||| | ||| | || ||||| ||||| ||||| || Sbjct 14069 AATTGGATAGCGTCG-GCTTTCGGGCGCCCGCGCATGTAGTACATGCCCGTCTTGAGTCC 14011 Query 109437 AGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| ||||| | ||||| || | ||| ||| | ||||| | ||| Sbjct 14010 CTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTTGCTGATCGTCGGGTCGGCAATATG 13951 Query 109497 CAAGTTCATCGACTGAGACTGATCGATG-AATCGACCACGATCAGCCGCCATGTCGATGA 109555 | ||| | ||||||| ||| |||| || || ||||| || || | || || | | Sbjct 13950 GATGTTGAGCGACTGACTCTGGCAGATGTAAGCG-CCACGGTCGGCTGACAGATCCAGCA 13892 Query 109556 TACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 |||| || | || ||||| || ||||||||| | ||| | | || || ||| Sbjct 13891 CCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTTACGTTGTCCGGGATGA 13832 Query 109616 CCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACC 109675 || || || || | ||| ||||| | |||| || | | | ||| || || Sbjct 13831 CCTTGACCTTCTGCACAGACCCACCGTCGTTCAGGATCTGGTTGCGAACCTCGGGCGTCC 13772 Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735 ||| || | || | || || | | || | |||||| || | || ||||||| Sbjct 13771 AGATGCCCAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAG 13712 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 |||| || ||| ||| ||||| | |||||||| |||| ||||||||||||| | Sbjct 13711 CAAGCACACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGATGGACTCATTGTTGCCCA 13652 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 |||| || ||||| ||||| || |||||||| |||| || || ||| |||| ||| | Sbjct 13651 GGATCTGCGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGT 13592 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACC--ACTAAATTTAGTCTC 109913 | | || ||| || || |||| | | | || || | || | | Sbjct 13591 GTTTGATAACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGACGACGGGGAGACGC 13532 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||||||| || || | | ||||| | |||||| || |||| ||| |||| Sbjct 13531 -----CCCACATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTC 13477 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033 ||| | ||| ||| ||| | ||| || | ||| | || ||||| || || || Sbjct 13476 GTAAGGGCCCAGCTCCTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGT 13417 Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGACCACAAA 110092 ||| ||||| | |||| ||||| || ||| | ||||| | | || || | Sbjct 13416 CTCGAAAATGTTCTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAG 13357 Query 110093 GAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAG 110152 || ||| | || || |||||||||||||| | ||| | ||||| || |||||| | Sbjct 13356 GATGAAAG-CGTCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGG 13298 Query 110153 AGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 | ||||| | || |||||| ||||| |||||| ||| |||||||| | Sbjct 13297 ACTTGCGAGCCTCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGG 13238 Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTC-TCCTTATTG 110271 |||| ||| || | || | ||| || | ||| | ||| | |||| ||| Sbjct 13237 TCACCACCTTAGTCACGTCGTAGAGCTTCTGGTAGTTGAAAACTC-CGTCCTCC------ 13185 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329 || |||| || || || | ||||| | |||||||| | ||| || | || | Sbjct 13184 ACGAATTTAGGCAGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCC--GGCGACG 13127 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTT---GGAACTCTTAATGACACCCAAGTTCTTCT 110386 |||| |||| | || |||||||| ||| | | || ||||| |||| || Sbjct 13126 TGTACTCCATCACCTCGCAGCACAAGTTACTGGAGCGGATCGTG---CCCAAATTCTGCT 13070 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | || || ||| |||| || ||||| || |||||| | || ||| || || ||| Sbjct 13069 GGTTGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCT 13010 Query 110447 GTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGT--TGCGTTAGCGAGA 110502 | | | | || | ||| || | || | | || || |||| || | Sbjct 13009 GCGCGTCCAAGATCGAGAACCA--CAGCTGCTGTGCATTGATCGTCTTGCGC--GCACGT 12954 Query 110503 CCTTCCTCCTCGTACTTGGTGTACA-AGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || |||| ||||||||| ||| | ||| ||||| || | ||| | ||| || | | Sbjct 12953 CCCTCCTTCTCGTACTTCTCGTAGAGAGTT-TCAAACTCGTCTCCCCAGCAC-TCGTAGA 12896 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || | | ||||||||| | ||| || ||| | || || | |||| Sbjct 12895 GGCCAGGAGCTTCATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCA 12836 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| ||||| | ||||| || |||| | |||||| ||| | || | || | Sbjct 12835 TGAACAGATCAGGGACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAAC-TCGTTG 12777 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| ||||| ||||| || || | || || | ||||| || || | ||| Sbjct 12776 CCGTGGTTCTTACGTAGGTCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAG 12717 Query 110740 ACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | ||||| ||||| ||||| | || |||||| || || || || ||| | || Sbjct 12716 ATAGCGAACGATCCTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTA 12657 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT---TCTG 110853 || |||| ||||| || || || |||| ||| || || || || | || ||| Sbjct 12656 AACACCCGCAGCATTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTG 12597 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 ||| |||| || |||| ||| ||| || |||||||| || ||||| || || Sbjct 12596 ---TTAGTGGCTCGGATGTTGTGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATG 12540 Query 110914 TGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||||| | || || | || || || ||||| || || ||| |||| | Sbjct 12539 CACGCACACTGCTTCAGAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGC 12480 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 | ||||| || |||| ||||||||| || || || || |||||||| || || || ||| Sbjct 12479 AAGAAGCACGAGGACAGCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCA 12420 Query 111034 TGAATGAACAGACCT-TGGGACATC 111057 || |||| | || | || |||||| Sbjct 12419 TGCGTGAAGA-ACTTCTGCGACATC 12396 >seq97 Length=59640 Score = 145 bits (160), Expect = 9e-30 Identities = 340/505 (67%), Gaps = 16/505 (3%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||| ||||| || || || | || | ||||||||||| ||||||| || | ||| Sbjct 41015 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40956 Query 11566 ATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | || ||| | || |||||| ||||| || || || ||||| Sbjct 40955 AGCACCACCACACCT---TCACTCGAGTTGAAACCATCCATCTCGACCAGCAGTTGGTTA 40899 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC----- 11677 | ||| | ||||||||| |||||| | | | | |||| ||||| | | Sbjct 40898 AGCGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTTCGTGCACGCG 40841 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| ||||| ||||| ||||| || || || || ||| ||||| |||| | || Sbjct 40840 CCACAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGA 40781 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || ||||| ||||| || || ||||| ||||||||||| | ||| | | ||| Sbjct 40780 ACAGGTCACGCACACGTGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCAG 40721 Query 11798 -AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 || ||||| ||| || || ||| |||||||| |||| || || || |||||| Sbjct 40720 AAATGCTGAA-GAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTA 40662 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 |||||||| || | ||| | || || || || |||||||||||||||| || | Sbjct 40661 CCCGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCAAGCTCAGTG 40602 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 |||||| | || |||||||| || | |||| | |||| |||||| ||| Sbjct 40601 AAGCGCTTCTGGTTGCGAAGGAAGTCAACGAACTCCATGATCTCCTTCTTGGCCTCGTCC 40542 Query 11977 ATACCCTCAACATCGGTGAAACGAG 12001 | ||| | ||||| | ||||||| Sbjct 40541 ACACCGGCCACATC-CTTAAACGAG 40518 >seq212 Length=40772 Score = 123 bits (136), Expect = 3e-23 Identities = 128/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| || ||||| || || ||||| | |||||| || ||||||| ||| ||| | || Sbjct 31261 CTTACCTCGCAGTGGGAAGACACCATAGTAATCTCTGCCAACGACGGCGAGGCCACCCAC 31320 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 ||| | |||||| || ||||| || || || | ||| || || || | || ||| | Sbjct 31321 AGCAACAGTTTTGGCGGAATCTCCTTCCGTTAGGATCAGAGTGCAAT--CCTTACTTTTC 31378 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 ||||||||||| | ||| |||||||||| |||||||||||| |||| Sbjct 31379 GCCGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCCGTGA 31424 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/367 (66%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 ||||||| || ||||| ||| | ||||| || | ||||| || | | | || ||||| Sbjct 30040 AACCCGTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTACC 30099 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | || || || || || | || || |||||||| || ||||| | ||| || | Sbjct 30100 ACTCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAG 30159 Query 167477 GATCGAAGAGCTTTCGA-GCCTCC-TTGGT--AAGCTTCGTAAAGATGTACCTCGT-CTG 167531 ||||| ||| ||||| || | ||| | ||| || || || ||||| | | ||| Sbjct 30160 GATCGTAGA---TTCGACGCGTGAGTTGCTCCAAG-TTGGTGAAAATGTAACGAGCACTG 30215 Query 167532 AGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATT 167591 | |||||||||||| ||||| | || ||||| || ||||| ||| ||||| | Sbjct 30216 -GCCGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTG 30274 Query 167592 GATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAAC 167651 |||||| || || | |||| | |||| || |||| | |||| | || | Sbjct 30275 GATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGA----TACAGCCCTGCAAGC 30330 Query 167652 ----TTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCT 167707 ||||||||||||||| ||| | || | ||| || | |||| |||||| |||| Sbjct 30331 TTTGTTCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCT 30390 Query 167708 TCATCTC 167714 | | ||| Sbjct 30391 TGAGCTC 30397 >seq14 Length=111874 Score = 102 bits (112), Expect = 1e-16 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||| ||||| || ||||| || ||||||||||| || | ||| Sbjct 21904 CCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTC 21845 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || ||||||||||||||||| ||||||| Sbjct 21844 TTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCGAGGCGAAC 21785 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | | | ||| || |||| |||||||||| |||||||| Sbjct 21784 GCCAGCAGACGCTCCG-GGTATGACGACACACGTGGGTCGCACCACTTGAGTGCCCAGTT 21726 Query 119690 GGCCTT 119695 ||| || Sbjct 21725 GGCTTT 21720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588931635382800