Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq345 219 5e-52 seq14 122 1e-22 seq97 95.1 1e-14 seq2982 86.0 7e-12 seq212 86.0 7e-12 >seq345 Length=31688 Score = 219 bits (242), Expect = 5e-52 Identities = 681/1037 (66%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| |||||||| | ||| | ||| | ||| ||||| || ||||| || || Sbjct 13346 TCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGCC 13287 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 | | || || ||| | || |||| || || ||| ||||| ||| || | ||| Sbjct 13286 TCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTA 13227 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 || | || | || || | || | ||| | || | || | || | || || Sbjct 13226 GTCACGTCGTAGAGCTTCTGGTAGTTGAAA-----ACTC-CGTCCTCCACGAATTTAGGC 13173 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || | || ||||| ||||| || ||| ||||||| |||||||| | | Sbjct 13172 AGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACC 13113 Query 106520 TCTGTACACAAGTT---GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || |||||||| ||| | ||||| |||||||||| ||||| ||| | Sbjct 13112 TCGCAGCACAAGTTACTGGAGCGG---ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGG 13056 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| ||| |||||||| |||||| ||||| |||||||| |||| | | | || Sbjct 13055 TTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATC 12996 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCCTCG 106690 | ||||| || |||| | || || ||| || || ||||||||| |||| Sbjct 12995 GAGAACCACA-----GCTGCTG-TGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCG 12942 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTT 106749 ||||| |||||| | ||||||||| || ||| | || ||| |||| || || || | Sbjct 12941 TACTTCTCGTAGAGAGTTTCAAACTCGTCTCCC-CAGCACTCGTAGAGGCCAGGAGCTTC 12883 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | |||||||| | | ||| | ||| | || || || |||||||| || || || Sbjct 12882 ATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGG 12823 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | |||||| | | || | || | | ||| | || || ||| || ||||| | Sbjct 12822 GACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTAC 12764 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 ||| || | |||||| | || || || ||||| ||||| | |||| |||| |||| Sbjct 12763 GTAGGTCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATC 12704 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | || || ||| | | || | || || || || ||| ||||||| || || |||| Sbjct 12703 CTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCA 12644 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 |||| || || |||| || || || || || || || | ||| |||||| | Sbjct 12643 TTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGA 12584 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | || || || ||||||||||||||||| || ||||| |||||||| | | | Sbjct 12583 TGTTGTGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCA 12524 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 |||| | ||||| || | || ||||| |||| |||| | | |||||| ||||| Sbjct 12523 GAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACA 12464 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 107224 ||| || | || || ||||| |||||||| || || || || || |||| | || | Sbjct 12463 GCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTC 12405 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 || |||||| ||||| ||||||| | | | |||| | ||||||||| | Sbjct 12404 TGCGACATCAACTCGTACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGA 12345 Query 107285 GCCACACGCATAAACAT 107301 ||||| ||||||| ||| Sbjct 12344 GCCACGCGCATAATCAT 12328 >seq14 Length=111874 Score = 122 bits (134), Expect = 1e-22 Identities = 333/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 22210 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 22151 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||| || || ||||| ||| | || | ||| || | | | || ||||| Sbjct 22150 CAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGG 22091 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | ||| Sbjct 22090 TCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACA 22031 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | | ||| | | ||||||| | ||||| || |||||| | || Sbjct 22030 -GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 21972 Query 117225 GATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | ||| ||| || | | || | | | ||| || ||| || | Sbjct 21971 CACACGGCTCTCCGGCAGTTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAGT 21916 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 || ||| | |||||||| ||| || || || || ||||||| || || ||||||| Sbjct 21915 CCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGA 21856 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 | || |||||||| | ||| | || | |||||| || || ||||||||||| ||||||| Sbjct 21855 GGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCA 21796 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTTC 117459 | | || ||||| | || ||||| | | | || ||| || || ||| |||| || Sbjct 21795 CCGAGGCGAACGCCAGCAGACGCTCCGGGTATGA-CGACACACGTGGGTCGCACCACTTG 21737 Query 117460 ATTGCCCATTTCGCCTTCTTC 117480 | |||||| || || |||||| Sbjct 21736 AGTGCCCAGTTGGCTTTCTTC 21716 >seq97 Length=59640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 270/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 || || ||||| ||||| || | || | ||||| |||||| | || ||||| | || Sbjct 41015 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40956 Query 9255 ATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || || | |||| ||| | | |||||||||||||| || ||||||||| Sbjct 40955 AGCACCACCACACCT---TCACTCGAGTTGAAACCATCCATCTCGACCAGCAGTTGGTTA 40899 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-C 9367 | || | ||| || || || || || | | | | || || || | ||| | | Sbjct 40898 AGCGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGTGCACGCGC 40840 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||| |||||||| ||||||||||| ||||| ||||| || | ||||| | || Sbjct 40839 CACAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGAA 40780 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 || || || || | | | |||||||| || |||||||| | || | | | || Sbjct 40779 CAGGTCACGCACACGTGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCAGA 40720 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | || ||| || || ||| |||||| ||| |||| || || || |||||||| Sbjct 40719 AATGCTGAAGAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTACC 40660 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 |||||| ||| || | || || |||||| || |||||||| ||| Sbjct 40659 CGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCA 40611 >seq2982 Length=4261 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2094 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2153 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 2154 CCGGTAGGAGCT 2165 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2838 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2897 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 2898 CCGGTAGGAGCT 2909 >seq212 Length=40772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 237/355 (67%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||| |||||||| || | || || ||||| ||||| || | | || ||||| | Sbjct 30042 CCCGTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTACCAC 30101 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 ||||| || || || | || || |||||||| || ||||| | | ||| ||||| Sbjct 30102 TCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAGGA 30161 Query 168411 TCAAAGATCTTGCGA-GCCTCT-TTGGT--AAGTTTTGTGAAAATGTACCTCGT-CTGAG 168465 || |||| ||| || | ||| | ||||| ||||||||||| | | ||| | Sbjct 30162 TCGTAGATT---CGACGCGTGAGTTGCTCCAAGTTG-GTGAAAATGTAACGAGCACTG-G 30216 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 |||||||| || ||||| | ||||||||| || ||||| || ||||||| | Sbjct 30217 CCGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGGA 30276 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTT 168585 ||||||| || | || | ||||| || || || | || ||| | || Sbjct 30277 TGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGTT 30336 Query 168586 CACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTT 168640 | || |||||||| ||||| | || | || || | ||||| ||||||||||| Sbjct 30337 CGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTT 30391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589936359696240