Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2038 109 1e-18 seq345 89.7 1e-12 >seq2038 Length=6223 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 799 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 740 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| || ||||| |||||||| || ||| Sbjct 739 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 680 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || ||||| || || || | |||||||| |||| || || || || Sbjct 679 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 620 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 619 ATCTGCAT 612 >seq345 Length=31688 Score = 89.7 bits (98), Expect = 1e-12 Identities = 192/282 (68%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | ||| | ||||| |||||||| | ||| ||| |||||| | ||| Sbjct 12805 TTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGAAGCCAATGGCAAGTGG 12864 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || | ||||||||||||||||| ||||| || | || | || |||||| || Sbjct 12865 AGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTACGAGTGCTGGGGAGACGAGTTTGAA 12924 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC---CAAAAAGGTCGTGAAGGCCCAA 160765 ||||| || || | ||||| || |||||| | || ||| | | || || || || Sbjct 12925 ACTCTCTACGAGAAGTACGAGAAGGAGGGACGTGCGCGCAAGACGATC---AATGCACAG 12981 Query 160766 GAACTGTGGCATCAC-ATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATA 160824 | |||||| || | ||| | | ||| || | ||| |||| ||||||| || || Sbjct 12982 CAGCTGTGG-TTCTCGATCTTGGACGCGCAGATTGAGACGGGTGTGCCCTTCATGCTGTA 13040 Query 160825 CAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| || | |||||| |||||| |||| ||||| Sbjct 13041 CAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAA-TTTGG 13081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109395939005942