Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2038 111 1e-19 seq911 93.3 3e-14 seq290 91.5 1e-13 >seq2038 Length=6223 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || || Sbjct 799 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 740 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| || ||||| ||||| Sbjct 739 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 680 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| |||||||| || ||||||| Sbjct 679 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCA 625 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 624 CAAAGATCTGCATGATTC 607 >seq911 Length=16908 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6175 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6117 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6116 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6057 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6056 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 5997 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 5996 GAAGATCTGCATCTT 5982 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6403 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6345 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6344 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6285 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6284 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 6225 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 6224 GAAGATCTGCAT 6213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6631 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6573 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6572 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6513 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6512 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 6453 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 6452 GAAGATCTGCAT 6441 >seq290 Length=35206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 14859 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 14800 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 14799 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 14740 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 14739 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 14680 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 14679 AAGATCTGCATCTTC 14665 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 15087 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 15028 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 15027 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 14968 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 14967 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 14908 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 14907 AAGATCTGCAT 14897 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 15315 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 15256 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 15255 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 15196 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 15195 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 15136 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 15135 AAGATCTGCAT 15125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324609758299728