Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq345 297 4e-75 seq14 239 8e-58 >seq345 Length=31688 Score = 297 bits (328), Expect = 4e-75 Identities = 1138/1767 (64%), Gaps = 65/1767 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| ||| ||| | |||||| | |||||| || Sbjct 14033 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT- 13975 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGG 212714 ||| | | || |||| | | | ||| | ||| || |||||||||||| Sbjct 13974 ----GCTGA-TCGTCGGGTC---------GGCAATATGGATGTTGAGCGACTGACTCTGG 13929 Query 212715 TCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCAC 212774 ||| | | | | | ||| || | || || | | |||| || ||||||| Sbjct 13928 CAGATGTAAGCGCCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCAC 13869 Query 212775 ACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCC 212834 || |||||| | | || || | || || |||| | | || |||||||||||||| Sbjct 13868 ACCGTCTTGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCA 13809 Query 212835 CTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGT---TCCAGAGGCCCCTGGTCTC- 212887 | || | |||| ||| ||| | ||||| |||||| |||| | || Sbjct 13808 CCGTC---GTTCAGGATCTGGTTGCGAA---CCTCGGGCGTCCAGATGCCCA-GCTCGAT 13756 Query 212888 CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTG 212947 ||| ||| | |||| ||| || ||| ||| ||||| | ||||| | | | Sbjct 13755 CAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTT 13696 Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||||||||||||||| ||| ||||| ||||| ||||| ||||| Sbjct 13695 GTACATGTTCGATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGA 13636 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-- 213065 || || |||||||| |||||||| || ||| | | ||||| | | || | | Sbjct 13635 AGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTG---ATAACGTT 13579 Query 213066 CGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACAT 213124 | || ||| | ||||||| ||| ||| ||| | | | ||| |||||| Sbjct 13578 CTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGAC--GACGGGGAG----ACGCCCCACAT 13525 Query 213125 GTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATG 213184 ||| ||||| ||||| || || || | || ||||||| | | ||| ||||| | Sbjct 13524 GTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCCAG 13465 Query 213185 CTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTC 213244 ||||||||| | ||| ||||| || || | || ||||||||||| || || || | Sbjct 13464 CTCCTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTT 13405 Query 213245 CCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATC 213304 | |||| |||| |||| | | ||| | ||||| | ||| | || Sbjct 13404 CTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAGGATGAAAGCGTC 13345 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACT 213363 ||||| ||||| || || || || | || | ||| | || ||| |||||| |||| || Sbjct 13344 GGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC-CT 13286 Query 213364 CCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGG 213423 || | | |||||| ||||| |||||| | ||||||||| || ||||| |||| || | Sbjct 13285 CCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAG 13226 Query 213424 TGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 | || | | || | || || ||||| || ||||||| ||| || | ||||| Sbjct 13225 TCACGTCGTAGAGCTTCTGGTAGTTGAAAACT------CCGTCCTCCACGAATTTAGGCA 13172 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | || | | |||| |||||| || |||||||| | | ||||||||||| | || Sbjct 13171 GTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCT 13112 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 || ||||| ||| ||| | ||||| ||||||| ||||| ||||| ||||| ||||| Sbjct 13111 CGCAGCACAAGTTACTGGAGCGGATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGG 13052 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||| |||||| |||| || ||||| | ||| | ||| ||| | Sbjct 13051 CCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGA 12992 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | || |||| | | | || ||| | | |||||||| | Sbjct 12991 ACCACAGCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTT---CTCGTACTTCT 12935 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGATGCGGGA 213782 ||||||| | || |||| |||||| | || || || ||| | || |||| Sbjct 12934 CGTAGAGAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCAT-TGGGA 12876 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || | | ||||| | || | || || | | ||||||||| || ||||||||| Sbjct 12875 CAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCAC 12816 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || ||| ||||| ||| | | | | ||||| || ||| || || || Sbjct 12815 AGAGCGTAGAACAAGTCACGAGCACGGTGCAACTCGT---TGCCGTGGTTCTTACGTAGG 12759 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || || |||| ||| || ||||||||||||| |||||| || || | || Sbjct 12758 TCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTA 12699 Query 213960 CTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | ||| |||||||||||||| || ||| ||| || | ||||| | || Sbjct 12698 CGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGG 12639 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 | | || |||||| ||||| || || || || | | ||| | | |||| Sbjct 12638 ATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTG 12579 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 ||| || || || || || || | |||||||| || || || ||| ||| Sbjct 12578 TGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTG 12519 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || |||||| | ||| ||| || | | |||||||||||| || ||||| Sbjct 12518 TCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGA 12459 Query 214197 GGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 || | | | ||||| |||||| |||||||| ||||||| | | ||||| | || Sbjct 12458 GGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGAC 12399 Query 214257 AGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC 214316 | | | ||| |||||||| ||| |||||| | ||||||||| ||||| ||| Sbjct 12398 ATCAACTCGTACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGC-CAC 12340 Query 214317 -CTCATCAGCATGTGCTGGGGCCTCTC 214342 | ||| | ||| ||||| |||| ||| Sbjct 12339 GCGCATAATCATTTGCTGCGGCCGCTC 12313 >seq14 Length=111874 Score = 239 bits (264), Expect = 8e-58 Identities = 561/841 (67%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| ||||| |||| | ||||| | ||||| Sbjct 22211 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22152 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| || || | | | || |||| | |||||| | Sbjct 22151 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACG 22092 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | |||||||| ||||||||| || || ||| Sbjct 22091 GTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCAC 22032 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | |||||| | ||| ||| ||| || || | ||| |||| | Sbjct 22031 AGGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 21972 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || ||| ||| | |||||||| ||| ||||| || | | |||||| ||||| Sbjct 21971 CACACGGCTCTCCGGCAGTTTGTTGACCAG---CTTGGAGTACATGAGGCAGGCGAAGTC 21915 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| || || |||||||| ||| |||| ||||||| |||||||||||||| Sbjct 21914 CGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAG 21855 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||||||||| Sbjct 21854 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCAC 21795 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 | |||||||| || | ||| | | || | | | || | | ||| | Sbjct 21794 CGAGGCGAACGCCAGCAGACGCTCCGGGTATGACGACACACGTGGGT-CGCACCACTTGA 21736 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCT 48377 | ||||||| || |||||| | | ||| || || ||||| ||||| | | ||| | | Sbjct 21735 GTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAAGTGGT 21676 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 ||| |||| |||||| | || || | |||||||| | ||| | ||| | Sbjct 21675 CCTT---CTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCTCCG 21622 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| ||||||||| | ||||| |||||||| Sbjct 21621 AGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCACCTGCA 21562 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| || ||| || ||| ||||| || || || ||||| || || || | Sbjct 21561 CTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTTACGATGCCATCACTGGCCGCGAAAA 21502 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| || ||||| || | ||| || |||||||||| | ||| |||| ||| | Sbjct 21501 AGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGGTTCGCCCAGTCCTTGA 21442 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | ||||||||| || || | ||||| || || || || || ||||||| Sbjct 21441 GGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAAAACGAAGCCTCGGCCTTCTTGTACA 21382 Query 48675 T 48675 | Sbjct 21381 T 21381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931462632291840