Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq345 178 2e-39 seq14 122 1e-22 seq97 96.9 4e-15 seq212 95.1 1e-14 >seq345 Length=31688 Score = 178 bits (196), Expect = 2e-39 Identities = 678/1045 (65%), Gaps = 31/1045 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | ||||| || || | ||||||||| | |||| | | | Sbjct 12319 CCGCAGCAAATGATTATGCGCGTGGCTCTGGGCATCCACAAGAGCAACATCCAGGCAGCT 12378 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| |||||| || | || | |||| || || || || || ||||| Sbjct 12379 CTGGAGACGTACGAGTTGATGTCGCAGAAGT-TCTTCACGCATGCCACTCCCACGCTCTT 12437 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| ||||| || || | || ||| ||||| |||||| | | |||| |||| || Sbjct 12438 CAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGA 12497 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || ||||| | ||||| | | |||||||| ||||| || |||||||| Sbjct 12498 CTCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGG 12557 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||||||||| || || || | | |||||| ||| | || || || || || Sbjct 12558 GGGTATTGGCATCAGTATGCACAACATCCGAGCCACTAACAGTTACATCCGAGGCACGAA 12617 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || || |||| || || |||||||| || || ||||||| ||| || || || || Sbjct 12618 CGGCTCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGT 12677 Query 75571 AAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | || |||| ||| || || || || |||| |||||||||| || |||||||| Sbjct 12678 GGACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGC 12737 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TA 75686 || || | |||||| | || |||| ||||| || ||| || || | ||| | Sbjct 12738 TGACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAACG-AGTTGCACCGTGCTC 12796 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || | || | | |||||| | || || || |||||||| || || || | || Sbjct 12797 GTGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGAAGCCAATG 12856 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAG 75805 | | ||| | | |||||||| | | || || || |||| ||| || | ||| || Sbjct 12857 GCAAGTGGAGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTACGAGTGCTG-GGGAGAC 12915 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGA-CTGT 75861 ||||||||| | |||||| ||||| || ||||||| | || ||| ||| | | Sbjct 12916 GAGTTTGAAACTCTCTACGAGAAGTACGAGAAGGAGGGACGTGCGCGCAAGACGATCAAT 12975 Query 75862 AC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | |||| || | ||| | || | | | |||| ||||| || || | Sbjct 12976 GCACAGCAGC-----TGTGGTTCTCGATCTTGGACGCGCAGATTGAGACGGGTGTGCCCT 13030 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| |||||||| || ||| ||| ||||| |||||||||| || ||| Sbjct 13031 TCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAATTTGGGCACGATC- 13089 Query 75981 AGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 |||| | | ||| ||| || | | |||||||| ||||||| ||| | Sbjct 13090 --CGCTCCAGTAACTTGTGCTGCGAGGTGATGGAGTACACGTCGCCGGATGAGGTGGCGG 13147 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG 76097 | ||||| ||||| || | || || || || | || | || | || | ||| Sbjct 13148 TGTGCAACTTGGCGTCCGTAGCACTGCCTAAATTCGTGGAGGACG-GAGT-----TTTCA 13201 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | || | || || | || | || ||| | || ||| ||||| ||| || || | Sbjct 13202 ACTACCAGAAGCTCTACGACGTGACTAAGGTGGTGACCCGTAATCTCAACAAGGTGATCG 13261 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 ||| || | ||| || || | | || || ||||| || ||||| ||| | ||| | | Sbjct 13262 ACATCAACTATTACCCAGTCGTGGAGGCTCGCAAGTCCAACATGCGCCACCGCCCTGTGG 13321 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGA 76242 || | |||||||| ||||| || || Sbjct 13322 GTATTGGTGTTCAGGGTCTGGCCGA 13346 >seq14 Length=111874 Score = 122 bits (134), Expect = 1e-22 Identities = 333/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGC 65080 |||||| || || |||||| | || |||| ||| || || ||| || | | | |||| Sbjct 21716 GAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCACGTGTGTCG-TCATACCCGGAGC 21774 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | || | ||||| || | |||||||| ||||||||||| || || |||||| | || | Sbjct 21775 GTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCT 21834 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| | |||||||| || |||||||| || || ||||||| || || || || || Sbjct 21835 TCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTGATCAGCC 21894 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGAC 65260 | |||||||| | ||| ||| || ||| || ||| | | | || | | || Sbjct 21895 GTGATGAGGGCATGCACACGGACTTCGCC-TG--CCTCATGTACTCCAAGC-TGGTCAAC 21950 Query 65261 CCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 ||| ||| | | | || | |||||| || ||||| | ||||||| | | | Sbjct 21951 AAACTGCCGGAGAGCCGTGTGCATGAGATCGTGCGTGACGCGGTGGTGATTGAGCACGAG 22010 Query 65317 TTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGTCCGA 65375 || | | ||| | ||||| ||| | || ||||| |||||||| | |||| | | Sbjct 22011 TTTGTGTGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGGCCTCATGTGCCA 22069 Query 65376 GTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAA 65435 |||||| |||| ||| | || ||||| || | | | || ||| | || | | Sbjct 22070 GTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCACTGGGTGTGTCCAAGATCTACCA 22129 Query 65436 CGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTT 65495 || ||||| || || |||| ||||| | || || | || ||||||||||| || Sbjct 22130 CGTCAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTTTT 22189 Query 65496 TGAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 22190 CGAGAAGCGTGTGGGCGAGTA 22210 >seq97 Length=59640 Score = 96.9 bits (106), Expect = 4e-15 Identities = 273/411 (66%), Gaps = 15/411 (4%) Strand=Plus/Plus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||||||||||||| || || || || | || ||| |||||||| ||||| || Sbjct 40611 TGGTGCCAAGATCCCCAAGGGTGCGCTGCTTGTTGGCCCGCCCGGTACGGGTAAGACGCT 40670 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCA 175392 || || |||| || |||||| | | || || ||| || || | |||| | Sbjct 40671 GCTGGCGAAGGCCACTGCTGGTGAAGCTAGCGTGCCGTTCTTCAGCATT--TCTGGTTCG 40728 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | || | |||||||| || ||||||||| | | | || || || || || | Sbjct 40729 GATTTCATCGAGATGTTCGTCGGTGTGGGTCCGTCACGTGTGCGTGACCTGTTCAAGGAG 40788 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG-GCAAGCA 175511 ||||| | || ||||| ||||| ||||||||||| |||||||| |||| || ||| Sbjct 40789 GCCCGTGCGAACGCTCCATGCATTGTGTTCATTGATGAAATTGATGCTGTGGCGCGTGCA 40848 Query 175512 --ACGC-AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 | || || || | | | | || || |||||| | ||| | || |||| ||||| Sbjct 40849 CGAAGCAAGGGCAACTTCTCGGGCGGC-AACGACGAGCGTGAAAACACGCTTAACCAACT 40907 Query 175569 ACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTGGTTATTGCGGCCAC 175625 || |||||||||||| || || | ||| || | ||||| |||| | ||| Sbjct 40908 GCTGGTCGAGATGGATGGTTTCAACTCGAGTGA---AGGTGTGGTGGTGCTTGCAGGCAC 40964 Query 175626 TAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || || | ||||| ||||| | ||| | || || || ||||| || || Sbjct 40965 GAACCGTGCTGATATTCTTGACAAGGCCATTCTGCGTCCTGGTCGATTCGA 41015 >seq212 Length=40772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/357 (67%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||||||||| ||||| | || || | || | ||||| |||||||| || ||| | Sbjct 30391 AAGGTGGCACAGCTGGCTGGTTACGTGTCCGAGCATTCTGCATACCACCACGGCGAACAA 30332 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 ||| || | || || || ||||| | || | || |||||||| || Sbjct 30331 AGCTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTTGTCGGAAGCAACAACATCCAC 30272 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 ||||| || ||||| || ||||||||| | ||||| || |||||||| | ||| Sbjct 30271 CTTCTATCGCCTATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCGGC-CAG 30213 Query 14612 -ACGAGGTACATTTTCACAAAACTT--ACCAA-GGAGGC-TCGCAAGATCTTTGATCCTC 14666 | | ||||||||||| ||||| | ||| | || ||| |||| ||||||| Sbjct 30212 TGCTCGTTACATTTTCAC-CAACTTGGAGCAACTCACGCGTCG---AATCTACGATCCTC 30157 Query 14667 GGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTT 14726 ||| | | ||||| || ||||| || || || | || || || ||||| | | Sbjct 30156 TGGACAATGATGTGCTCAAGTATTTGGATGAAGACGGCCAGTCGATCGAGCCAGAGTGGT 30097 Query 14727 ACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 |||| || | ||| || ||||| ||||| || || | || |||||||| ||||||| Sbjct 30096 ACATTCCGATTTTCCCCATGGTGCTCGTCAACGGCAGTGACGGTATCGGAACGGGTT 30040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524663394880