Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq874 152 2e-32 >seq874 Length=16017 Score = 152 bits (168), Expect = 2e-32 Identities = 394/597 (66%), Gaps = 20/597 (3%) Strand=Plus/Plus Query 65129 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65188 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 6492 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 6547 Query 65189 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 65241 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 6548 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 6607 Query 65242 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 65301 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 6608 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 6667 Query 65302 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65361 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 6668 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 6727 Query 65362 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65421 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 6728 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 6787 Query 65422 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 65481 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 6788 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 6847 Query 65482 GCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 65538 | ||||| | | |||| |||| ||| | | | | | |||||| | || Sbjct 6848 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 6904 Query 65539 CGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTT 65598 ||||| | |||| | | || || | |||| || | || |||| ||| || Sbjct 6905 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCGAGGTGACGTCCGGTGGCACGGCGTT 6961 Query 65599 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65658 | | | |||||| || || || |||| |||| |||| | || ||||| ||||| Sbjct 6962 GCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGGGCGA 7021 Query 65659 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65715 ||| ||||||||| || ||| ||||| | ||||||||||||||| |||| Sbjct 7022 CCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGCC 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242212610145242