Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq874 136 2e-27 >seq874 Length=16017 Score = 136 bits (150), Expect = 2e-27 Identities = 394/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 64816 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64875 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 6492 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 6547 Query 64876 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 64928 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 6548 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 6607 Query 64929 CTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 64988 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 6608 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 6667 Query 64989 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65048 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 6668 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 6727 Query 65049 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65108 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 6728 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 6787 Query 65109 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 65168 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 6788 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 6847 Query 65169 GCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 65225 | || || | | |||| |||| ||| | | | | | |||||| | || Sbjct 6848 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 6904 Query 65226 CGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGAAAGG 65281 ||||| | |||| | | || || |||| | | ||| || || || | || Sbjct 6905 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCG-AGGTGACGTCC---GGTGGCACGG 6957 Query 65282 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 65341 | ||| | | |||||| || || || |||| |||| |||| | || ||||| | Sbjct 6958 CGTTGCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGG 7017 Query 65342 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGC 65401 |||| ||| ||||||||| || ||| || || | ||||||||||||||| ||| Sbjct 7018 GCGACCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGC 7077 Query 65402 C 65402 | Sbjct 7078 C 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238932851034592