Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1319 129 2e-24 seq197 102 2e-16 seq505 100 8e-16 >seq1319 Length=10577 Score = 129 bits (142), Expect = 2e-24 Identities = 185/256 (72%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| |||||||| | ||| || ||||| |||||||| | ||| ||||| Sbjct 7191 CGGCGCTGAATGTAACCAGTCTCGGCTGTCTTCACAGCAGTATCAATCAAACCTTCACGA 7250 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| |||||||| | ||| | |||| || | ||| ||| | | ||| | | Sbjct 7251 CCACCCATAGCGTGGAAGAAGAACTCCTGCGGT-GTCAAACCCTTCAA-ATACGAGTTTT 7308 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || |||||||| ||| || | ||| || |||| |||| ||||| || | Sbjct 7309 CCACAAAACCACGACTCTCAGGGCCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTAC 7365 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 || | | ||||| |||||||||||||| || || |||||||| |||| || | || Sbjct 7366 GGTGGTTGAAACCGTACGGGATACGCTTTCCTTCGACATTCTGCTGACCCACACAAGCAA 7425 Query 302828 TCATCTGCGAAATATT 302843 | || |||||||| || Sbjct 7426 TAATTTGCGAAATGTT 7441 >seq197 Length=41850 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 29625 CTTGATAGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 29566 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 29565 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCGGCAGCCAGCACAACCTTCACCTTCTG 29506 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 ||||| || || | | || || | |||||||||| | | ||| ||| Sbjct 29505 ACCGCCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCACCCAGGCCGAAGCA 29446 Query 354183 GTCGAGATGTTTCTGTACG 354201 |||||| || ||||| ||| Sbjct 29445 GTCGAGGTGCTTCTGCACG 29427 >seq505 Length=25211 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||||||||||||||| || || | ||| || ||||| || ||||| Sbjct 16866 CCGTGAGAGATCAGACAATCACGCTCCATCTCTCCCATACGCAGCCCACCCTCACGAGCA 16807 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||| || ||||| || | Sbjct 16806 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACAGGGCCACGCGAGCGCGAGTGGATC 16747 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 16746 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 16694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471703963722762