Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq911 111 1e-19 seq290 102 7e-17 seq345 98.7 9e-16 seq2038 91.5 1e-13 >seq911 Length=16908 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 5984 GATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6043 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6044 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6103 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || || ||||| ||||| || ||||||||||| | | || || || || Sbjct 6104 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6163 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 6164 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6212 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 6213 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6272 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6273 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6332 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 6333 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAAC 6392 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 6393 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6440 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 6441 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6500 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6501 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6560 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 6561 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAAC 6620 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 6621 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6667 >seq290 Length=35206 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 14668 GATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTC 14727 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 14728 GGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 14787 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||| || || || ||||||||||| | | || || || || Sbjct 14788 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 14847 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 14848 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 14896 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 14897 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 14956 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 14957 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 15016 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 15017 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 15076 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 15077 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 15124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 15125 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 15184 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 15185 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 15244 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 15245 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 15304 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| |||| | ||||| || Sbjct 15305 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 15351 >seq345 Length=31688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 890/1427 (62%), Gaps = 79/1427 (6%) Strand=Plus/Minus Query 138471 CAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATAC 138530 || || ||||| || || || || || |||| | || | || ||||| || | || Sbjct 13764 CAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCAC 13705 Query 138531 TCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTG 138590 || || ||| ||||| ||| | ||||| | || || ||||| ||||| ||||| Sbjct 13704 ACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTG 13645 Query 138591 AGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTT 138650 || || | || || |||||| ||||||| || || || || | |||||| || Sbjct 13644 CGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGTGT---TT 13588 Query 138651 GATT-CGTTC--CTTGAGCGACGACCAGTCCCACAAATCG--CTA-GGTTTTTTGTTCCA 138704 ||| ||||| ||| |||| | ||||| ||||| || | | || | ||| Sbjct 13587 GATAACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGACGACGGGGAGACGCCCCA 13528 Query 138705 CATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACC 138764 ||| ||| |||| || || ||| ||| || || ||| | | ||| ||||| || Sbjct 13527 CATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCC 13468 Query 138765 AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAAT 138824 | ||| | || | ||| || || ||| | | ||||||| || || ||| ||| Sbjct 13467 CAGCTCCTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAAT 13408 Query 138825 CTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGT 138878 | || || ||| || |||| |||| ||| ||| |||| ||| | Sbjct 13407 GTTCTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAGGA------T 13354 Query 138879 GAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGC 138938 ||| ||||||||||| || || || || | || |||||||| ||||||| || ||| Sbjct 13353 GAAAGCGTCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGAC-- 13296 Query 138939 TTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCA 138994 ||||| || || || || |||||||| | ||||| | ||||| | ||| || Sbjct 13295 --TTGCGAGCCTCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGG 13238 Query 138995 CGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGA 139054 |||||||||||| | | | | | ||| | ||| |||| | Sbjct 13237 TCACCACCTTAGTCACGT-CGTAGAGC-TTC----TGGTA---------GTTGAAAACTC 13193 Query 139055 CGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGG 139114 || | || || ||||| | | || || | ||||||||||||||| || || | Sbjct 13192 CGTCCTCCACGAATTTAGGCAGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCG 13133 Query 139115 G-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTT 139173 | | || |||| || | | ||| ||||| ||||| | |||||| || ||||| Sbjct 13132 GCGACG-TGTACTCCATCACCTCGCAGCACAAGTTACTGGAGCGGATCGTGCCCAAATTC 13074 Query 139174 TGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCC 139233 || || ||| || ||||| || || ||||| ||||| | || || || || Sbjct 13073 TGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCA 13014 Query 139234 ACTTGTGTCTCTATAATGAATTTGAACAA--------GTCCCTAGCTTGTATTTGACGCA 139285 | || | || | || | |||| | || | | | | || || |||| Sbjct 13013 ATCTGCGCGTCCAAGATCGA---GAACCACAGCTGCTGTGCATTGATCGTCTTGCGCGCA 12957 Query 139286 CGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCG 139344 ||| | || ||||||||| |||||||| || || |||| | || || Sbjct 12956 CGTC-----CCTCCTTCTCGTACTTCTCGTAGAGAGTTTCAAACTCGT-CTCCCCAGCAC 12903 Query 139345 TCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACG 139404 || | || | || | | ||||| | | ||| ||| || || | ||| Sbjct 12902 TCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACG 12843 Query 139405 CGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATC 139463 || ||||||||||||| || | ||||| |||| | | ||| || || || | | | Sbjct 12842 CGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAAC 12783 Query 139464 TTCCGAACCCATG----TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519 | || || || |||||| | || | ||| || || |||||||| ||||| | Sbjct 12782 T--CGTTGCCGTGGTTCTTACGT---AGGTCCAAGAACTCGAAGACGTCAGCATGCCACG 12728 Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTA 139576 | |||| ||||| || | | ||||| |||||||| || || || |||| || Sbjct 12727 GCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAG 12668 Query 139577 CAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTAC 139636 | | | || || || |||| ||| || | || | | | ||||| |||| | Sbjct 12667 CCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTC 12608 Query 139637 GGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATT 139696 ||||| |||||| ||||||| || || | | ||||||| || || || | ||| Sbjct 12607 GGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGATGCCAATACCCCCAGCCCATT 12548 Query 139697 TGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGC 139755 |||| || | | || | || | | || ||||| || || ||| |||||||||| Sbjct 12547 TGGAGATGCACGCACACT-GCTTCAGAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGC 12489 Query 139756 ATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTA 139815 || | | || ||||| || || || || || | ||||| || || || || Sbjct 12488 ATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTG 12429 Query 139816 GGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 ||| | || |||||||| | | | ||||||||| |||||||| || Sbjct 12428 GGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTACGTCTC 12382 >seq2038 Length=6223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 612 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 671 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 672 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 731 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | |||| || || ||| Sbjct 732 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAAC 791 Query 24884 ATTCAAAAGG 24893 || || |||| Sbjct 792 ATCCAGAAGG 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863711463280