Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_022065.1 Length=74533 Score E Sequences producing significant alignments: (Bits) Value seq874 149 3e-31 >seq874 Length=16017 Score = 149 bits (164), Expect = 3e-31 Identities = 397/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 65099 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65158 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 6492 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 6547 Query 65159 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 65211 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 6548 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 6607 Query 65212 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 65271 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 6608 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 6667 Query 65272 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 65331 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 6668 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 6727 Query 65332 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 65391 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 6728 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 6787 Query 65392 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 65451 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 6788 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 6847 Query 65452 GCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 65508 | ||||| | | |||| |||| ||| | | | | | |||||| | || Sbjct 6848 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 6904 Query 65509 CGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGCAAGG 65564 ||||| | |||| | | || || |||| | | ||| || || |||| || Sbjct 6905 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCG-AGGTGACGTCC---GGTGGCACGG 6957 Query 65565 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 65624 | ||| | | |||||| || || || |||| |||| |||| | || ||||| | Sbjct 6958 CGTTGCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGG 7017 Query 65625 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 65684 |||| ||| ||||||||| || ||| ||||| | ||||||||||||||| ||| Sbjct 7018 GCGACCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGC 7077 Query 65685 C 65685 | Sbjct 7078 C 7078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238363292867084