Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq173 269 4e-66 seq14 201 2e-45 seq72 179 6e-39 seq304 174 2e-37 seq345 150 3e-30 seq652 145 1e-28 seq667 93.3 7e-13 seq310 87.8 3e-11 seq86 86.0 1e-10 >seq173 Length=44675 Score = 269 bits (298), Expect = 4e-66 Identities = 361/495 (73%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 2018903 CGACTTTG-GCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGG 2018961 |||||||| | |||| |||| | || |||||||| ||| ||||| | ||| | |||| Sbjct 37869 CGACTTTGAGGCTCC-GTGGGTGGAGAAGTACCGTCCGCGCGTGCTGGCGGACGTGGTGG 37811 Query 2018962 GCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGG-CAACATGCCCAAC 2019020 ||||| || | | || ||| ||||| |||| || | ||| ||||||| | ||| Sbjct 37810 GCAACCGCGACACGATCGCGAGCCTACAGGCGATGGC-GCAGGCGGGCAACATGACGAAC 37752 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 || | ||| |||| ||||| |||||||| ||||||||||||||| | | ||||||||| Sbjct 37751 CTGATCCTGTCGGGGCCGCCGGGCACGGGTAAGACCACGAGCATCCTGAGTCTGGCGCGC 37692 Query 2019081 GTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGC 2019140 | ||| ||||| || || | |||| ||||| || ||||||||||| ||||| ||| Sbjct 37691 GAGCTGCTGGGCCCGAGCGTGAAGCAGGCGGTGCTGGAGCTCAATGCGTCCGACGACCGC 37632 Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACCTGC 2019198 ||| | ||| |||||| || | |||||| || ||| | || | || |||| Sbjct 37631 GGCATCGACACCGTGCGCAGCAAGATCAAGATGTTCGCGCAGCAGAAGGTGACG--CTGC 37574 Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258 | || || ||||||||| | | ||||| || ||||| |||| | | ||||| ||||||| Sbjct 37573 CTCCGGGTCGCCACAAGATCGTGATCCTGGACGAGGCGGACTCCATGACGTCCGCGGCCC 37514 Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318 ||||||| || ||| || ||||| | | | | ||| ||||||||||||||||||| Sbjct 37513 AGCAGGCGCTGCGACGCACGATGGAGATCTTCTCGGCCACCACGCGGTTTGCGCTGGCCT 37454 Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378 |||||| || ||| | ||||||| | ||||||| || |||||||| ||||||| Sbjct 37453 GCAACAACTCCACGAAGATCATCGAGCCGATCCAGAGTCGCTGCGCCATTCTGCGCTTCA 37394 Query 2019379 CGCGCCTCACCGACG 2019393 |||| || | |||| Sbjct 37393 CGCGGCTGCCAGACG 37379 >seq14 Length=111874 Score = 201 bits (222), Expect = 2e-45 Identities = 242/327 (74%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || || ||||||| ||||| |||| ||| || |||||||||||||||||| Sbjct 21904 CCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTC 21845 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| ||||||||| ||||||||||| || | ||| || Sbjct 21844 TTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCGAGGCGAAC 21785 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| | | || | | | | | || | |||||| | ||||| Sbjct 21784 GCCAGCAGACGCTCCGGGTA--TGACGACACACG-TGGGTCGCACCACTTGAGTGCCCAG 21728 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || ||| |||| | || | || || ||||| || | | |||||||||||| Sbjct 21727 TTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAAGTGGTCCTTCTCA 21668 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | |||||||| ||| ||||| ||||| ||||||||| ||| ||||||||||| ||| Sbjct 21667 ATGGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCG 21608 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||||||||| || |||||| Sbjct 21607 ATGGCAATCTGGAAGCCGTAGAAGCAG 21581 Score = 179 bits (198), Expect = 6e-39 Identities = 233/315 (74%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||| | ||||||||||| ||| ||||||||||||||||||||||| ||| Sbjct 22225 ACACCAGCCTTAGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGA 22166 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCT-CGCACCCG 794009 ||||||| |||||||| ||||||||| | ||| ||||| ||| | ||||| Sbjct 22165 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGT--GGTAGATCTTGGACACACCC- 22109 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || || ||||| ||||| || ||||| || |||||||||||||||||| | | |||| Sbjct 22108 AGTGAGTACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTC 22049 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| || | |||||||| | ||| ||| | || || Sbjct 22048 ATGCCGATCAGCTCCACAGGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCG 21989 Query 794130 TCGATGATGATCTGCCTGGGCACGTC-GGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || | ||||| | || |||| | || | | |||| ||| ||| | | ||| | Sbjct 21988 TCACGCACGATCT-CATGCACACGGCTCTCCGGCAGTTTGTTGACCAGCTTGGAGTACAT 21930 Query 794189 CAGGCAGGCAAAGTC 794203 |||||||| ||||| Sbjct 21929 GAGGCAGGCGAAGTC 21915 Score = 161 bits (178), Expect = 2e-33 Identities = 203/273 (74%), Gaps = 12/273 (4%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| || || || || || ||||| |||||||||||| |||||||| Sbjct 21577 GCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTTACGATGCCA 21518 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| |||||||||||||| || ||||||| ||||||||||||| ||| ||| Sbjct 21517 TCACTGGCCGCGAAAAAGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGG 21458 Query 796270 GAGACCCAGTGGACCGT---GTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||||| || | |||| || || ||||| | ||||||||| |||||||| || Sbjct 21457 TTCGCCCAGT---CCTTGAGGTCGTGCACC-AGGTCCAGCTCCTCGGCCGTCCAAAACGA 21402 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACA 796383 ||||||||||| |||||||||| ||| | ||| || | | |||||||| || || Sbjct 21401 AGCCTCGGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGAATGGGGAAGAGCACG 21344 Query 796384 AAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 ||||| || |||||||| || | ||||||| Sbjct 21343 AAGCGGTTCGGGTTCTCCACAAGGAACGGCTCG 21311 >seq72 Length=67061 Score = 179 bits (198), Expect = 6e-39 Identities = 195/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| ||||||| || ||| | | Sbjct 36640 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCGGGGA 36699 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||||||||||||||| ||| || || ||| |||||| | Sbjct 36700 GCATGAGGCGCACGGCGGTCTGGATCTCACGGCTGGAGAGCGTCGACTTCTTGTTGTATC 36759 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | | || || |||| |||||||||| |||||||||| Sbjct 36760 GCGACAGCTTGCCGGCCTCCGAGGCAATACGCTCGAAGATGTCGTTGATGAACGAGTTCA 36819 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 36820 TGATCGACATGCCGCGCTTGCTGATGCCCGTCTCGGGGTGCACCTGACGCAGCACCTTGT 36879 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 36880 AGATGTAGGTCGAGTACGA 36898 >seq304 Length=34321 Score = 174 bits (192), Expect = 2e-37 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| ||||||| || ||| | | Sbjct 26448 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCGGGGA 26507 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||||||||||||||| ||| || || ||| |||||| | Sbjct 26508 GCATGAGGCGCACGGCGGTCTGGATCTCACGGCTGGAGAGCGTCGACTTCTTGTTGTATC 26567 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | | || || |||| |||||||||| |||||||||| Sbjct 26568 GCGACAGCTTGCCGGCCTCCGAGGCAATACGCTCGAAGATGTCGTTGATGAACGAGTTCA 26627 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| || ||||||||||| |||||||||| Sbjct 26628 TGATCGACATGCCGCGCTTGCTGATGCCCGTCTCAGGGTGCACCTGACGCAGCACCTTGT 26687 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 26688 AGATGTAGGTCGAGTACGA 26706 >seq345 Length=31688 Score = 150 bits (166), Expect = 3e-30 Identities = 215/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || || |||||||||||||| || || ||||| || | | ||| || Sbjct 12687 GCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATT 12628 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 |||| |||||| ||||| | ||| | | ||| || | |||||| | Sbjct 12627 GGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT 12568 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || || ||| ||||||||| ||| |||| ||||| || ||||||||||| Sbjct 12567 GCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCC 12508 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || |||||| ||| |||| ||| || |||||||| || || || |||| || Sbjct 12507 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGT 12448 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||| || |||||||||||||| || || |||| | ||| || ||||| |||||| Sbjct 12447 GCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTA 12388 Query 2073837 GGT 2073839 || Sbjct 12387 CGT 12385 >seq652 Length=20755 Score = 145 bits (160), Expect = 1e-28 Identities = 319/470 (68%), Gaps = 6/470 (1%) Strand=Plus/Minus Query 118584 CCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACACG 118643 ||||| | | || |||||||||| | | |||| |||| ||||||||||||| || | Sbjct 12904 CCCAGCACGGAGCTCGTGACCGTGCTCGCCCCGCTCTTCTCCACGCCGCGCATGACCATG 12845 Query 118644 CACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGAT 118702 |||||||| | |||| | ||||| | ||||| | | || | |||| | |||| Sbjct 12844 CACATGTGCGTGGCCTCAATGACGACCGCCACGCC-CTTGGGCTCAATGACGCCCATGAT 12786 Query 118703 -GCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGT 118761 || ||| ||||||| || || |||||||||||| | || |||| || | Sbjct 12785 AGCGTTCG-CGATCTGCTTGGTCAGTCTCTCCTGCACCTGCAGACGTCTAGAGAACACCT 12727 Query 118762 CGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGT 118821 || | || | || |||||| || || | | |||| ||| | ||||| | || Sbjct 12726 CGCTCACTCGAGCGAGCTTGCTGAGCCCCAGCACTTTGCCGTTGGGGATATAGCCGATGT 12667 Query 118822 GCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGC 118881 || | ||||| | || |||| || |||||||||||||||||| | | ||| ||||| | Sbjct 12666 GCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTACAGGTCGATGTCCC 12607 Query 118882 GCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCC 118940 ||||| | ||||||||| || || ||| | || | ||| ||| | | |||||| Sbjct 12606 GCACGATGACCATCTCG-TCGTGGTCCTCCTCGAACACGGCCTCGTTCAGCACGTCGGCC 12548 Query 118941 AGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTG 119000 ||| || ||| || || |||| | | || || ||||||| |||||| ||||| Sbjct 12547 AGGCTCTGGCCGTAACCTTTCGTGTTGTAGAGCAAAGCTTTGGCCATGCGCATTGGCGTC 12488 Query 119001 TCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAGACAGACCAGCATGGT 119050 | | ||| ||||||||| | |||||| || | || |||||| ||| Sbjct 12487 TTGACGAGTCCCTCGCGCTGCGGGTCCTCTCCGATGCATTCCAGCAAGGT 12438 >seq667 Length=20413 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1703794 TACAACGGATGCCATGGATGGCGCCGCCGCTTACGACCACCTCGACGTCGTCAAGTGGCT 1703853 |||||||| ||| ||||||||||| || | |||||||| || ||||| |||||||| Sbjct 8304 TACAACGGCTGCTATGGATGGCGCGGCAAGAAATGACCACCTTGATGTCGTGAAGTGGCT 8363 Query 1703854 CCACGAGAATCGCACCGAGGGATGCGCGACTGCCGCCATGGATAGCGCCGC 1703904 |||||| |||||| || |||||| | |||| || |||||| |||| || Sbjct 8364 TCACGAGCATCGCAATGAAGGATGCACCTCTGCAGCAATGGATGGCGCAGC 8414 Score = 87.8 bits (96), Expect = 3e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1703789 GGGTTTACAACGGATGCCATGGATGGCGCCGCCGCTTACGACCACCTCGACGTCGTCAAG 1703848 |||| |||||| | |||||||||||| || || || ||| |||||||||||||| | Sbjct 13336 GGGTGTACAACCGCTGCCATGGATGGAGCAGCAGCAAACGGGCACCTCGACGTCGTTCGG 13277 Query 1703849 TGGCTCCACGAGAATCGCACCGAGGGATGCGCGACTGCCGCCATGGATAGCGCCGC 1703904 ||||||||||| | |||||||| || ||| | || | || |||||| | || || Sbjct 13276 TGGCTCCACGAACACCGCACCGAAGGTTGCACAACGACAGCAATGGATCGTGCTGC 13221 >seq310 Length=34099 Score = 87.8 bits (96), Expect = 3e-11 Identities = 159/226 (70%), Gaps = 14/226 (6%) Strand=Plus/Minus Query 1249580 TATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAGAGCAGCAACCTGCTG 1249639 ||||||||| | |||||||| ||| | |||||||| |||||| | ||| | || Sbjct 10498 TATCTGCACTCTCTCGACCCCATCGTGCTGCACCGCGACCTCAAGTCGATGAACATTCTC 10439 Query 1249640 --GTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCGCATCCGCGAGG 1249697 |||| || || | ||| |||| | | ||||| || || |||||| | || Sbjct 10438 CTGTCG--GAAGATTGGGATGCCAAGCTCACAGACTTCGGCGTCTCGCGCAA----GTGG 10385 Query 1249698 ACAATGC-CACCATGACGCGGTGCG---GCACGCCGGCG-TGGACGGCGCCCGAGGTCAT 1249752 || || |||||||||| | ||| ||||| |||| |||| ||||||||||||||| Sbjct 10384 ACGGTGGACACCATGACGGCGGGCGTCGGCACGA-GGCGCTGGATGGCGCCCGAGGTCAT 10326 Query 1249753 CCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGC 1249798 ||| ||||||||||| |||||||| ||| |||| ||||| Sbjct 10325 GATGGGCAAGCGCTACGACACCAGCGCCGACATCTTCTCGTTCGGC 10280 >seq86 Length=62618 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 2175306 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 2175365 || ||||||||||| |||||| || ||| |||||||| |||||||||||||| ||||| Sbjct 55051 GATCCGTCGAGGTCCGGGTCGTTGATCAGCCCCTTCCAGCCGACGGTCGTGCGGGGCTTC 55110 Query 2175366 TCGACATAGGCGCGCATGAC 2175385 |||| || |||||||||| Sbjct 55111 TCGAAGTACACGCGCATGAC 55130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915605386895414