Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq290 125 1e-23 seq911 102 2e-16 >seq290 Length=35206 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || ||| | | ||| Sbjct 14883 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 14824 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | ||| || || || || || ||||||||| Sbjct 14823 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14764 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| || || || |||| || || || || || | || || Sbjct 14763 TCTTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 14705 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||||||||||| || || |||||||| Sbjct 14704 CGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 14669 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || ||| | | ||| Sbjct 15111 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 15052 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | ||| || || || || || ||||||||| Sbjct 15051 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 14992 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| || || || |||| || || || || || | || || Sbjct 14991 TCTTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 14933 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||||||||||| || || |||||||| Sbjct 14932 CGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 14897 Score = 123 bits (136), Expect = 5e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||||| || || || ||||| || || || || ||| | | || Sbjct 15340 ACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCC 15281 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| || | ||| || || || || || |||||||| Sbjct 15280 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTT 15221 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 |||||||||||| ||||| || || || |||| || || || || || | || | Sbjct 15220 ATCTTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGA 15162 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||||||||| || || |||||||| Sbjct 15161 TCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 15125 >seq911 Length=16908 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || ||| Sbjct 6211 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6152 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || || || || || || ||||||| || || || || || || Sbjct 6151 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6092 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || || ||||| || || || |||| || || || || Sbjct 6091 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6033 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 6032 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 5985 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || ||| Sbjct 6439 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6380 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || || || || || || ||||||| || || || || || || Sbjct 6379 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6320 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || || ||||| || || || |||| || || || || Sbjct 6319 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6261 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 6260 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6213 Score = 102 bits (112), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || ||| Sbjct 6667 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6608 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || || || || || || ||||||| || || || || || || Sbjct 6607 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6548 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || || ||||| || || || |||| || || || || Sbjct 6547 ATGCCTTCCTTGTCCTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 6489 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 6488 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981751394962814